Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0628 ATGGAGGGCAAGCGAGAGATTAGCAGCAGCAGCAGTGAGCTTGCCAAAAAATGGATGGCATTTGATACAGGATCCAACACTAAAGACAGTCCTGATAATGGTACTAAAGATCCAAATGAGTCAAATCAAGCAAAACAAGACAGGAAGAAAAACTTCCCATCTTCTTCCAAACCAGACATATTAACAGAAGGAAGCATAGTAGAAAGGGCAGCAGAGTGGGGACTCGTGGTTAAGACAGACGTGGAGGAAGGCAGTTTCAAGGCCATTGTGGGGAGCGCCTCAGGGGAAGGGGATGGTAGCAAAAGGTTATCAGAGAGAAAAAGTGCAGGAAGAAACTCTAGCTTTACTAATGAAGGCTCGGGAGCCTTTCCAAGGGTATCACAAGAATTGAAAGACGCTTTGGCTTCTTTGGAACAGACATTTGTGGTCTCTGATGCCACCAAACCAGACTGCCCAATTGTATATGCAAGCAGTGGGTTTTTCGGCATGACCGGTTATGCTTCCGAGGAGATCATAGGAAGGAACTGCCGATTTCTTCAGGGACCAGAGACGGACCAGAAAGAGGTAGATAAAATTCGAAATGCAGTGAAAAATGGCAAAAGCTATTGTGGAAGGCTACTGAACTACAAGAAGAACGGCACTCCTTTCTGGAATCTCCTAACGGTCACCCCTATCAAGGATGATAATGGCAATACCATCAAATTTATTGGAATGCAGGTAGAGGTAAGCAAATACACAGAAGGCATAAATGATAGGGCATTACGACCAAATGGATTACCCAAGTCATTAATCCGCTATGATGCTCGTCAGAAGGAAAAGGCAATGGTTTCCATCACAGAGGTCGTTCAGACTGTGAAAAACCCTCGACCTCACAATCGAAGTGTGAGTCATGATACTGACAGAAATAATGAGGAGTTGGAGAAATTCAACTTGGACTATGTTCTCCCAAAGTCAGTTGAAGCTGTAAATAGTACACCAGGTCGACAAACTCCTCAACAGAATCTTGGCGATGATGGCTTAAGCAAGAAACCTAGATTATCAAGTCGCGTTTCTTTAATGGGGTTTAAAGGAAAATCTCTGAGCAGTTCAAGGAAGCTTCAAGAAAAAACAATCATTGAACCAGAAGTTTTGATGACCAGAGAAATAGAAAGGTCTGATAGTTGGGATCGTTCTGAAAGAGATACTCGCCAAGGAATTGATTTAGCCACTACATTGGAACGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTGCCTGATAACCCCATCATATTTGCATCTGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGCCGGTTTCTTCAAGGACCAGAAACAGACCAAGAAACCGTCTCGAAGATACGGGATGCAATTAGGGAGCAAAAGGAAATAACTGTTCAGTTGATCAATTATACGAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCCATGCGTGATGAAGAGGGCGAGCTTCAATACTTTATTGGTGTCCAACTTGATGGAAGTGGTCATGTGGAACCTTTGCGAAACCGCCTTTCGGAGGGAACAGAGCAACAAAGTGCTATGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTGCGTGAACTTCCTGATGCCAACTTGAGACCGGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGTATAGCTCTTCTTGGATTGCTATACAAAAGATTATTCTAGGTGGTGAAAAAATTGGACTCCATCATTTCAGACCAATAAGACCACTGGGTTGTGGAGACACTGGGAGTGTTCATCTGGTGGAACTGCTAGGCACAGGCGAACTTTATGCTTTGAAAGCTATGGAGAAATCAGTACTGTTGAATCGTAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATCGCGCTTCTGGATCATCCTTTTCTTCCAACACTATATACTTCATTTGAGACCCCTACACATGTTTGTTTGATAACGGATTTCTGCGCTGGTGGGGAGTTGTTTGCATTGATTGATAAGCAGCCAATGAAAATGTTTAAAGAGGAGTCAGCAAGGTTCTATGCTGCAGAGGTTGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATTATTTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGACATATTATACTTGCTGACTTTGATTTATCACTTATGACATCTTGCAAACCGCAGATAGTGAAGTATTCATTGCCTAACAATAGAAGGAGATCTCGAAGTCAACCACCCCCAGTATTTGTTGCGGAGCCAGTTACACAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATCACAGGTGAAGGCCACAGTAGCTCTATTGATTGGTGGGCACTTGGTATATTGTTGTATGAGATGCTCTACAGTCGTACACCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGCTAACATCTTGCACAAAGATCTCACCTTTCCAAGTAGCATTCCGGTAAGTCTAGCAGCAAGGCAGTTGATTAATGCATTGCTACAAAGAGACCCGACCAGGCGGTTAGGATCAAATACAGGTGCAAATGAAATCAAACAACACTCCTTTTTCCAGTCAATCAATTGGCCACTTATCCGGTGTATGGTTCCACCACCACTAGAATCACCCCTTCAGCTGATTGGGAAAGATAAAAAAGCAAAGGACATAAATTGGGAAGACGATGGGGTGCTTGCTAATTCAGCCAACACAGAATTTTTCTGA 2805 42.78 MEGKREISSSSSELAKKWMAFDTGSNTKDSPDNGTKDPNESNQAKQDRKKNFPSSSKPDILTEGSIVERAAEWGLVVKTDVEEGSFKAIVGSASGEGDGSKRLSERKSAGRNSSFTNEGSGAFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEIIGRNCRFLQGPETDQKEVDKIRNAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDRALRPNGLPKSLIRYDARQKEKAMVSITEVVQTVKNPRPHNRSVSHDTDRNNEELEKFNLDYVLPKSVEAVNSTPGRQTPQQNLGDDGLSKKPRLSSRVSLMGFKGKSLSSSRKLQEKTIIEPEVLMTREIERSDSWDRSERDTRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQKEITVQLINYTKTGKKFWNLFHLQPMRDEEGELQYFIGVQLDGSGHVEPLRNRLSEGTEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKYSSSWIAIQKIILGGEKIGLHHFRPIRPLGCGDTGSVHLVELLGTGELYALKAMEKSVLLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCAGGELFALIDKQPMKMFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHIILADFDLSLMTSCKPQIVKYSLPNNRRRSRSQPPPVFVAEPVTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYSRTPFRGKNRQKTFANILHKDLTFPSSIPVSLAARQLINALLQRDPTRRLGSNTGANEIKQHSFFQSINWPLIRCMVPPPLESPLQLIGKDKKAKDINWEDDGVLANSANTEFF 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50079413 50104503 - evm.model.ptg000010l.876 HCH2g0628 539853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0628 934 FunFam Putative LOV domain-containing protein 140 296 - -
HCH2g0628 934 SMART pas_2 399 468 IPR000014 -
HCH2g0628 934 SMART pas_2 128 197 IPR000014 -
HCH2g0628 934 SUPERFAMILY PYP-like sensor domain (PAS domain) 413 512 IPR035965 -
HCH2g0628 934 ProSiteProfiles PAS repeat profile. 397 470 IPR000014 -
HCH2g0628 934 MobiDBLite consensus disorder prediction 322 337 - -
HCH2g0628 934 ProSiteProfiles PAC domain profile. 471 525 IPR000700 -
HCH2g0628 934 ProSiteProfiles Protein kinase domain profile. 598 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0628 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0628 934 FunFam LOV domain-containing protein 597 681 - -
HCH2g0628 934 SMART pac_2 203 245 IPR001610 -
HCH2g0628 934 SMART pac_2 474 516 IPR001610 -
HCH2g0628 934 SUPERFAMILY PYP-like sensor domain (PAS domain) 147 239 IPR035965 -
HCH2g0628 934 Pfam PAS domain 420 512 IPR000014 -
HCH2g0628 934 Pfam PAS domain 147 243 IPR000014 -
HCH2g0628 934 Gene3D Transferase(Phosphotransferase) domain 1 682 901 - -
HCH2g0628 934 CDD PAS 412 512 IPR000014 -
HCH2g0628 934 FunFam LOV domain-containing protein 386 550 - -
HCH2g0628 934 CDD STKc_phototropin_like 596 908 - -
HCH2g0628 934 ProSiteProfiles PAC domain profile. 200 254 IPR000700 -
HCH2g0628 934 PANTHER FLIPPASE KINASE 1-RELATED 554 906 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH2g0628 934 Gene3D PAS domain 140 311 - -
HCH2g0628 934 Gene3D Phosphorylase Kinase; domain 1 597 681 - -
HCH2g0628 934 FunFam Putative LOV domain-containing protein 682 897 - -
HCH2g0628 934 Gene3D PAS domain 387 550 - -
HCH2g0628 934 CDD PAS 153 242 IPR000014 -
HCH2g0628 934 NCBIfam PAS domain S-box protein 152 243 IPR000014 -
HCH2g0628 934 NCBIfam PAS domain S-box protein 422 512 IPR000014 -
HCH2g0628 934 ProSiteProfiles PAS repeat profile. 126 199 IPR000014 -
HCH2g0628 934 SMART serkin_6 598 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0628 934 MobiDBLite consensus disorder prediction 90 122 - -
HCH2g0628 934 MobiDBLite consensus disorder prediction 322 343 - -
HCH2g0628 934 ProSitePatterns Protein kinases ATP-binding region signature. 604 627 IPR017441 GO:0005524(InterPro)
HCH2g0628 934 Pfam Protein kinase domain 601 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0628 934 MobiDBLite consensus disorder prediction 23 40 - -
HCH2g0628 934 SUPERFAMILY Protein kinase-like (PK-like) 574 908 IPR011009 -
HCH2g0628 934 MobiDBLite consensus disorder prediction 1 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0628 HCH-Chr2:50079413 HCH9g0115 HCH-Chr9:603573 7.40E-96 dispersed
HCH10g0247 HCH-Chr10:2074549 HCH2g0628 HCH-Chr2:50079413 2.80E-19 transposed
HCH1g0956 HCH-Chr1:57778387 HCH2g0628 HCH-Chr2:50079413 5.20E-51 transposed
HCH2g1136 HCH-Chr2:54029545 HCH2g0628 HCH-Chr2:50079413 2.30E-305 transposed
HCH2g0628 HCH-Chr2:50079413 HCH7g0369 HCH-Chr7:2662668 4.40E-290 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81321 PF00069 Pkinase 2.90E-60 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0628 K20715 - csv:101215355 1570.06