Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0628 | ATGGAGGGCAAGCGAGAGATTAGCAGCAGCAGCAGTGAGCTTGCCAAAAAATGGATGGCATTTGATACAGGATCCAACACTAAAGACAGTCCTGATAATGGTACTAAAGATCCAAATGAGTCAAATCAAGCAAAACAAGACAGGAAGAAAAACTTCCCATCTTCTTCCAAACCAGACATATTAACAGAAGGAAGCATAGTAGAAAGGGCAGCAGAGTGGGGACTCGTGGTTAAGACAGACGTGGAGGAAGGCAGTTTCAAGGCCATTGTGGGGAGCGCCTCAGGGGAAGGGGATGGTAGCAAAAGGTTATCAGAGAGAAAAAGTGCAGGAAGAAACTCTAGCTTTACTAATGAAGGCTCGGGAGCCTTTCCAAGGGTATCACAAGAATTGAAAGACGCTTTGGCTTCTTTGGAACAGACATTTGTGGTCTCTGATGCCACCAAACCAGACTGCCCAATTGTATATGCAAGCAGTGGGTTTTTCGGCATGACCGGTTATGCTTCCGAGGAGATCATAGGAAGGAACTGCCGATTTCTTCAGGGACCAGAGACGGACCAGAAAGAGGTAGATAAAATTCGAAATGCAGTGAAAAATGGCAAAAGCTATTGTGGAAGGCTACTGAACTACAAGAAGAACGGCACTCCTTTCTGGAATCTCCTAACGGTCACCCCTATCAAGGATGATAATGGCAATACCATCAAATTTATTGGAATGCAGGTAGAGGTAAGCAAATACACAGAAGGCATAAATGATAGGGCATTACGACCAAATGGATTACCCAAGTCATTAATCCGCTATGATGCTCGTCAGAAGGAAAAGGCAATGGTTTCCATCACAGAGGTCGTTCAGACTGTGAAAAACCCTCGACCTCACAATCGAAGTGTGAGTCATGATACTGACAGAAATAATGAGGAGTTGGAGAAATTCAACTTGGACTATGTTCTCCCAAAGTCAGTTGAAGCTGTAAATAGTACACCAGGTCGACAAACTCCTCAACAGAATCTTGGCGATGATGGCTTAAGCAAGAAACCTAGATTATCAAGTCGCGTTTCTTTAATGGGGTTTAAAGGAAAATCTCTGAGCAGTTCAAGGAAGCTTCAAGAAAAAACAATCATTGAACCAGAAGTTTTGATGACCAGAGAAATAGAAAGGTCTGATAGTTGGGATCGTTCTGAAAGAGATACTCGCCAAGGAATTGATTTAGCCACTACATTGGAACGCATTGAGAAAAATTTTGTCATTACTGATCCAAGGCTGCCTGATAACCCCATCATATTTGCATCTGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGCCGGTTTCTTCAAGGACCAGAAACAGACCAAGAAACCGTCTCGAAGATACGGGATGCAATTAGGGAGCAAAAGGAAATAACTGTTCAGTTGATCAATTATACGAAGACTGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCCATGCGTGATGAAGAGGGCGAGCTTCAATACTTTATTGGTGTCCAACTTGATGGAAGTGGTCATGTGGAACCTTTGCGAAACCGCCTTTCGGAGGGAACAGAGCAACAAAGTGCTATGCTGGTTAAAGCCACTGCAGAGAATGTTGATGAGGCTGTGCGTGAACTTCCTGATGCCAACTTGAGACCGGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGTATAGCTCTTCTTGGATTGCTATACAAAAGATTATTCTAGGTGGTGAAAAAATTGGACTCCATCATTTCAGACCAATAAGACCACTGGGTTGTGGAGACACTGGGAGTGTTCATCTGGTGGAACTGCTAGGCACAGGCGAACTTTATGCTTTGAAAGCTATGGAGAAATCAGTACTGTTGAATCGTAACAAGGTCCACAGAGCATGCATTGAAAGGCAAATCATCGCGCTTCTGGATCATCCTTTTCTTCCAACACTATATACTTCATTTGAGACCCCTACACATGTTTGTTTGATAACGGATTTCTGCGCTGGTGGGGAGTTGTTTGCATTGATTGATAAGCAGCCAATGAAAATGTTTAAAGAGGAGTCAGCAAGGTTCTATGCTGCAGAGGTTGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATTATTTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGACATATTATACTTGCTGACTTTGATTTATCACTTATGACATCTTGCAAACCGCAGATAGTGAAGTATTCATTGCCTAACAATAGAAGGAGATCTCGAAGTCAACCACCCCCAGTATTTGTTGCGGAGCCAGTTACACAATCAAATTCATTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATCACAGGTGAAGGCCACAGTAGCTCTATTGATTGGTGGGCACTTGGTATATTGTTGTATGAGATGCTCTACAGTCGTACACCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGCTAACATCTTGCACAAAGATCTCACCTTTCCAAGTAGCATTCCGGTAAGTCTAGCAGCAAGGCAGTTGATTAATGCATTGCTACAAAGAGACCCGACCAGGCGGTTAGGATCAAATACAGGTGCAAATGAAATCAAACAACACTCCTTTTTCCAGTCAATCAATTGGCCACTTATCCGGTGTATGGTTCCACCACCACTAGAATCACCCCTTCAGCTGATTGGGAAAGATAAAAAAGCAAAGGACATAAATTGGGAAGACGATGGGGTGCTTGCTAATTCAGCCAACACAGAATTTTTCTGA | 2805 | 42.78 | MEGKREISSSSSELAKKWMAFDTGSNTKDSPDNGTKDPNESNQAKQDRKKNFPSSSKPDILTEGSIVERAAEWGLVVKTDVEEGSFKAIVGSASGEGDGSKRLSERKSAGRNSSFTNEGSGAFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEIIGRNCRFLQGPETDQKEVDKIRNAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDRALRPNGLPKSLIRYDARQKEKAMVSITEVVQTVKNPRPHNRSVSHDTDRNNEELEKFNLDYVLPKSVEAVNSTPGRQTPQQNLGDDGLSKKPRLSSRVSLMGFKGKSLSSSRKLQEKTIIEPEVLMTREIERSDSWDRSERDTRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQKEITVQLINYTKTGKKFWNLFHLQPMRDEEGELQYFIGVQLDGSGHVEPLRNRLSEGTEQQSAMLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKYSSSWIAIQKIILGGEKIGLHHFRPIRPLGCGDTGSVHLVELLGTGELYALKAMEKSVLLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCAGGELFALIDKQPMKMFKEESARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHIILADFDLSLMTSCKPQIVKYSLPNNRRRSRSQPPPVFVAEPVTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYSRTPFRGKNRQKTFANILHKDLTFPSSIPVSLAARQLINALLQRDPTRRLGSNTGANEIKQHSFFQSINWPLIRCMVPPPLESPLQLIGKDKKAKDINWEDDGVLANSANTEFF | 934 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50079413 | 50104503 | - | evm.model.ptg000010l.876 | HCH2g0628 | 539853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0628 | 934 | FunFam | Putative LOV domain-containing protein | 140 | 296 | - | - | |
HCH2g0628 | 934 | SMART | pas_2 | 399 | 468 | IPR000014 | - | |
HCH2g0628 | 934 | SMART | pas_2 | 128 | 197 | IPR000014 | - | |
HCH2g0628 | 934 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 413 | 512 | IPR035965 | - | |
HCH2g0628 | 934 | ProSiteProfiles | PAS repeat profile. | 397 | 470 | IPR000014 | - | |
HCH2g0628 | 934 | MobiDBLite | consensus disorder prediction | 322 | 337 | - | - | |
HCH2g0628 | 934 | ProSiteProfiles | PAC domain profile. | 471 | 525 | IPR000700 | - | |
HCH2g0628 | 934 | ProSiteProfiles | Protein kinase domain profile. | 598 | 885 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0628 | 934 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 719 | 731 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g0628 | 934 | FunFam | LOV domain-containing protein | 597 | 681 | - | - | |
HCH2g0628 | 934 | SMART | pac_2 | 203 | 245 | IPR001610 | - | |
HCH2g0628 | 934 | SMART | pac_2 | 474 | 516 | IPR001610 | - | |
HCH2g0628 | 934 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 147 | 239 | IPR035965 | - | |
HCH2g0628 | 934 | Pfam | PAS domain | 420 | 512 | IPR000014 | - | |
HCH2g0628 | 934 | Pfam | PAS domain | 147 | 243 | IPR000014 | - | |
HCH2g0628 | 934 | Gene3D | Transferase(Phosphotransferase) domain 1 | 682 | 901 | - | - | |
HCH2g0628 | 934 | CDD | PAS | 412 | 512 | IPR000014 | - | |
HCH2g0628 | 934 | FunFam | LOV domain-containing protein | 386 | 550 | - | - | |
HCH2g0628 | 934 | CDD | STKc_phototropin_like | 596 | 908 | - | - | |
HCH2g0628 | 934 | ProSiteProfiles | PAC domain profile. | 200 | 254 | IPR000700 | - | |
HCH2g0628 | 934 | PANTHER | FLIPPASE KINASE 1-RELATED | 554 | 906 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
HCH2g0628 | 934 | Gene3D | PAS domain | 140 | 311 | - | - | |
HCH2g0628 | 934 | Gene3D | Phosphorylase Kinase; domain 1 | 597 | 681 | - | - | |
HCH2g0628 | 934 | FunFam | Putative LOV domain-containing protein | 682 | 897 | - | - | |
HCH2g0628 | 934 | Gene3D | PAS domain | 387 | 550 | - | - | |
HCH2g0628 | 934 | CDD | PAS | 153 | 242 | IPR000014 | - | |
HCH2g0628 | 934 | NCBIfam | PAS domain S-box protein | 152 | 243 | IPR000014 | - | |
HCH2g0628 | 934 | NCBIfam | PAS domain S-box protein | 422 | 512 | IPR000014 | - | |
HCH2g0628 | 934 | ProSiteProfiles | PAS repeat profile. | 126 | 199 | IPR000014 | - | |
HCH2g0628 | 934 | SMART | serkin_6 | 598 | 885 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0628 | 934 | MobiDBLite | consensus disorder prediction | 90 | 122 | - | - | |
HCH2g0628 | 934 | MobiDBLite | consensus disorder prediction | 322 | 343 | - | - | |
HCH2g0628 | 934 | ProSitePatterns | Protein kinases ATP-binding region signature. | 604 | 627 | IPR017441 | GO:0005524(InterPro) | |
HCH2g0628 | 934 | Pfam | Protein kinase domain | 601 | 885 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0628 | 934 | MobiDBLite | consensus disorder prediction | 23 | 40 | - | - | |
HCH2g0628 | 934 | SUPERFAMILY | Protein kinase-like (PK-like) | 574 | 908 | IPR011009 | - | |
HCH2g0628 | 934 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0628 | HCH-Chr2:50079413 | HCH9g0115 | HCH-Chr9:603573 | 7.40E-96 | dispersed | |
HCH10g0247 | HCH-Chr10:2074549 | HCH2g0628 | HCH-Chr2:50079413 | 2.80E-19 | transposed | |
HCH1g0956 | HCH-Chr1:57778387 | HCH2g0628 | HCH-Chr2:50079413 | 5.20E-51 | transposed | |
HCH2g1136 | HCH-Chr2:54029545 | HCH2g0628 | HCH-Chr2:50079413 | 2.30E-305 | transposed | |
HCH2g0628 | HCH-Chr2:50079413 | HCH7g0369 | HCH-Chr7:2662668 | 4.40E-290 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81321 | PF00069 | Pkinase | 2.90E-60 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g0628 | K20715 | - | csv:101215355 | 1570.06 |