Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0639 | ATGGATGGATTTGATAGCAACAACGATAAACAAAGCATCGAAAGACATTCCCATGTTGAGATGGGATCATTAGGCGAGAAAACGATATTGGAATTTGAGGATGAGAGCCTTGTTAGTCCTGTATCGATAAGTAGAAAGGATTTTGCATTTGAGGATAATTTGCGTACTTCATCATTGGGTGGTGTTTCATCGAAAGTTAGTTATTGTGATATGAAGAACAGGGTAATTGACAGCATTAAGATTGTTGTCTTCTCTGCTAAAATCAACTTACTCATGCCCTTCGGCCCTTTAGCAATATTGGTCAATAGTTTTTCTGGTCATAATGGTTGGGTCTTCCTTTTAAGCTTACTGGGGATCATACCTCTTGCTGAGCGTTTGGGTTATGCAACCGAACAACTGGCATGCTATACTGGACCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATTTCAATATATGCATTGCGCAGAGGAATGATACGTGTTGTTCAACAGTCATTACTTGGCTCAATCTTGTCAAATATGTTACTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGGTTGCTGTTGATGGCTGTGATGGGCCTCTTACTTCCGGCTGTCCTTCACTCCACACATACAGAGTTGCACTTTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGTGGCATTATGTTGGTGGCATATGTTGCGTATCTTTTCTTTCAGTTGAAAACTGAGAGGAACTTGTATGTCCCGGTTGATGAGGGGGAGATTGAAGTGAGCTCTGATGACGGAGAAGCTCCTGAGATTTCTATGTGGGAATCTATTATTTGGCTGTCTATTTTGACTATCTGGATTTCAGTTCTCTCAGAATACTTAGTTAATGCAATAGAGGGGGCATCTGTTGCCATGAACATACCAGTAGCATTCATTAGTGTTATTCTACTACCGATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATTATGTTTGCCATGAAAGACAAGCTTGACATATCTTTGGGAGTGGCAATAGGATCATCTACACAGATATCCATGTTTGGGATTCCTTTTTGTGTGATAATTGGCTGGATCATGGGATGCCCTATGGACTTAAATTTTCAACTTTTCGAGACAGCCACACTCTTCATCACTGTTATAGTTGTGGGCTTCTTGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTGATGCTTATTCTTTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCTGCTTCAGTTGTGGACAAGACCCGAAAACCCCACGATTGA | 1374 | 41.48 | MDGFDSNNDKQSIERHSHVEMGSLGEKTILEFEDESLVSPVSISRKDFAFEDNLRTSSLGGVSSKVSYCDMKNRVIDSIKIVVFSAKINLLMPFGPLAILVNSFSGHNGWVFLLSLLGIIPLAERLGYATEQLACYTGPTVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKAAATVNSGLLLMAVMGLLLPAVLHSTHTELHFGKSELALSRFSSGIMLVAYVAYLFFQLKTERNLYVPVDEGEIEVSSDDGEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVIIGWIMGCPMDLNFQLFETATLFITVIVVGFLLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVVDKTRKPHD | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50201946 | 50206705 | - | evm.model.ptg000010l.865 | HCH2g0639 | 539864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0639 | 457 | Gene3D | - | 139 | 275 | IPR044880 | - | |
HCH2g0639 | 457 | Gene3D | - | 280 | 441 | IPR044880 | - | |
HCH2g0639 | 457 | Pfam | Sodium/calcium exchanger protein | 110 | 265 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH2g0639 | 457 | Pfam | Sodium/calcium exchanger protein | 297 | 439 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH2g0639 | 457 | FunFam | Vacuolar cation/proton exchanger | 139 | 278 | - | - | |
HCH2g0639 | 457 | NCBIfam | calcium/proton exchanger | 92 | 440 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
HCH2g0639 | 457 | FunFam | Vacuolar cation/proton exchanger | 285 | 441 | - | - | |
HCH2g0639 | 457 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 52 | 445 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0639 | HCH-Chr2:50201946 | HCH6g0909 | HCH-Chr6:43853292 | 9.90E-163 | dispersed | |
HCH2g0639 | HCH-Chr2:50201946 | HCH11g0094 | HCH-Chr11:1180591 | 2.00E-94 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g0639 | K07300 | - | csv:101215915 | 766.148 |