Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0639 ATGGATGGATTTGATAGCAACAACGATAAACAAAGCATCGAAAGACATTCCCATGTTGAGATGGGATCATTAGGCGAGAAAACGATATTGGAATTTGAGGATGAGAGCCTTGTTAGTCCTGTATCGATAAGTAGAAAGGATTTTGCATTTGAGGATAATTTGCGTACTTCATCATTGGGTGGTGTTTCATCGAAAGTTAGTTATTGTGATATGAAGAACAGGGTAATTGACAGCATTAAGATTGTTGTCTTCTCTGCTAAAATCAACTTACTCATGCCCTTCGGCCCTTTAGCAATATTGGTCAATAGTTTTTCTGGTCATAATGGTTGGGTCTTCCTTTTAAGCTTACTGGGGATCATACCTCTTGCTGAGCGTTTGGGTTATGCAACCGAACAACTGGCATGCTATACTGGACCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATTTCAATATATGCATTGCGCAGAGGAATGATACGTGTTGTTCAACAGTCATTACTTGGCTCAATCTTGTCAAATATGTTACTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGGGAGCAGGTCTTCAGTAAGGCAGCTGCTACAGTGAATTCTGGGTTGCTGTTGATGGCTGTGATGGGCCTCTTACTTCCGGCTGTCCTTCACTCCACACATACAGAGTTGCACTTTGGAAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGTGGCATTATGTTGGTGGCATATGTTGCGTATCTTTTCTTTCAGTTGAAAACTGAGAGGAACTTGTATGTCCCGGTTGATGAGGGGGAGATTGAAGTGAGCTCTGATGACGGAGAAGCTCCTGAGATTTCTATGTGGGAATCTATTATTTGGCTGTCTATTTTGACTATCTGGATTTCAGTTCTCTCAGAATACTTAGTTAATGCAATAGAGGGGGCATCTGTTGCCATGAACATACCAGTAGCATTCATTAGTGTTATTCTACTACCGATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATTATGTTTGCCATGAAAGACAAGCTTGACATATCTTTGGGAGTGGCAATAGGATCATCTACACAGATATCCATGTTTGGGATTCCTTTTTGTGTGATAATTGGCTGGATCATGGGATGCCCTATGGACTTAAATTTTCAACTTTTCGAGACAGCCACACTCTTCATCACTGTTATAGTTGTGGGCTTCTTGTTGCAGGATGGAACTTCTAATTACCTCAAAGGACTGATGCTTATTCTTTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCTGCTTCAGTTGTGGACAAGACCCGAAAACCCCACGATTGA 1374 41.48 MDGFDSNNDKQSIERHSHVEMGSLGEKTILEFEDESLVSPVSISRKDFAFEDNLRTSSLGGVSSKVSYCDMKNRVIDSIKIVVFSAKINLLMPFGPLAILVNSFSGHNGWVFLLSLLGIIPLAERLGYATEQLACYTGPTVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKAAATVNSGLLLMAVMGLLLPAVLHSTHTELHFGKSELALSRFSSGIMLVAYVAYLFFQLKTERNLYVPVDEGEIEVSSDDGEAPEISMWESIIWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVIIGWIMGCPMDLNFQLFETATLFITVIVVGFLLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVVDKTRKPHD 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50201946 50206705 - evm.model.ptg000010l.865 HCH2g0639 539864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0639 457 Gene3D - 139 275 IPR044880 -
HCH2g0639 457 Gene3D - 280 441 IPR044880 -
HCH2g0639 457 Pfam Sodium/calcium exchanger protein 110 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g0639 457 Pfam Sodium/calcium exchanger protein 297 439 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH2g0639 457 FunFam Vacuolar cation/proton exchanger 139 278 - -
HCH2g0639 457 NCBIfam calcium/proton exchanger 92 440 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
HCH2g0639 457 FunFam Vacuolar cation/proton exchanger 285 441 - -
HCH2g0639 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 52 445 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0639 HCH-Chr2:50201946 HCH6g0909 HCH-Chr6:43853292 9.90E-163 dispersed
HCH2g0639 HCH-Chr2:50201946 HCH11g0094 HCH-Chr11:1180591 2.00E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0639 K07300 - csv:101215915 766.148