Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0643 ATGGGTTACATGTGTGATTTCTGTGGGGATCAAAGGTCAATGGTCTACTGTCGGTCTGATGCTGCGTGTTTATGTTTATCGTGTGACCGTAATGTCCACTCAGCCAATGCCCTGTCGAGACGCCACTCGAGAACATTGTTATGTGAAAGATGCAATGTGCAAGCTGCAACAGTTAGATGCATTGAAGAAAGGATTTCTCTCTGTCAGAATTGTGATTGGAATGGTCATGGCACGTCTACCTCTGCTTCATCACACAAGAGGCAAACGATCAATTGTTACTCCGGCTGTCCATCAGCTTCAGAACTGTCGTCTATATGGTCATTTGTTTTGGATTTACCCTCTGTAAATGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCTGAGAATGAGCTGAGGAGTGCCTGGAGCCCTTCTGAGAATTATACTGTCCAAAAAATGCCCAAGCCAGCTGAAGTTAGTGATCTTTGCAGTAGGGAAAAATCAAATGCCTGGATTGGATCGTCTTCGGTTTCTGACTTTGGCTCTAGGCCTCACACTTCAGATCATCCAGTTGAATTGGTTAATGTGGGTCGACCCAAGTATTTCTGCCCTGAAACCAAAGTTTCTGGACTCTGCAGTGATGATGACCTCTGCAAGGAGTATGATATGGATGAAATGAGTTTGAATCTTGAAAACTATGAGGAACTATTTGGTGTAGGCCTTAATTCTGAAGAATTTTTTGAGAATGGTGGAATTGATAGCCTTTTCGAGGCAAAAGACGTGTCTTTTGAAGATTCTATTTGCCAGGGTGCAGTTGCTGCAGAGGGGTCTTCTGTCGGATTGGTTAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGATTCAGTGATGAGTTCTAAAACTGAACCAATTCTTTGTAATTCAAAGCAACCACAAACTGGTCTGTCATTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATTATCAAGATTGTGGAGCCACTTCAATGTTTCTAATGGGAGAGCCTCCCTGGTGTCCCCCTGGCCCTGAAAATTCCTTACCATCTACTGATCGTAATAACGCTGTTCTGCGTTATATGGAAAAGAAGAAGACACGCAAGTTTGAGAAAAGAGTGAGATACGCCACTCGCAAAGCAAGGGCTGATGTCAGGAAGCGTGAGAAGGGACGGTTTGTCAAAGCCGGACATGCATATGATTACGACCCATTGAGCCAAACTAGAAGCTTCTGA 1242 44.36 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNVQAATVRCIEERISLCQNCDWNGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDLPSVNDACEQELGLMSIAENELRSAWSPSENYTVQKMPKPAEVSDLCSREKSNAWIGSSSVSDFGSRPHTSDHPVELVNVGRPKYFCPETKVSGLCSDDDLCKEYDMDEMSLNLENYEELFGVGLNSEEFFENGGIDSLFEAKDVSFEDSICQGAVAAEGSSVGLVKPMQPACSNGASADSVMSSKTEPILCNSKQPQTGLSFSGLTGESSAGDYQDCGATSMFLMGEPPWCPPGPENSLPSTDRNNAVLRYMEKKKTRKFEKRVRYATRKARADVRKREKGRFVKAGHAYDYDPLSQTRSF 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50240050 50243560 + evm.model.ptg000010l.861 HCH2g0643 539868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0643 413 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH2g0643 413 SMART bboxneu5 48 90 IPR000315 GO:0008270(InterPro)
HCH2g0643 413 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH2g0643 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
HCH2g0643 413 CDD Bbox1_BBX-like 47 90 IPR049808 -
HCH2g0643 413 Pfam CCT motif 356 398 IPR010402 GO:0005515(InterPro)
HCH2g0643 413 Pfam ANCHR-like B-box zinc-binding domain 47 86 - -
HCH2g0643 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 402 - -
HCH2g0643 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515(InterPro)
HCH2g0643 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0643 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0643 HCH-Chr2:50240050 HCH5g1176 HCH-Chr5:40118108 3.70E-15 dispersed
HCH2g0754 HCH-Chr2:51200939 HCH2g0643 HCH-Chr2:50240050 2.40E-46 transposed
HCH2g0643 HCH-Chr2:50240050 HCH7g0361 HCH-Chr7:2602156 2.80E-124 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0345 . 19 366 C2C2-CO-like Transcription Factor Family AT5G15850 50.3 1.2e-57 220.7
HCH4g0488 . 1 346 C2C2-CO-like Transcription Factor Family AT5G24930 60.5 3.1e-82 302.4
HCH8g1002 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 51.2 6.4e-56 214.9
HCH8g1002 . 1 370 C2C2-CO-like Transcription Factor Family AT5G57660 51.6 2.1e-67 253.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 8.6e-88 320.9
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.8e-82 303.1
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH2g0643 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 6.2e-86 314.7
HCH7g0361 . 1 415 C2C2-CO-like Transcription Factor Family AT5G48250 52.8 2.9e-83 305.8
HCH7g0529 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 54.6 5.2e-52 201.8
HCH12g0156 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.6e-51 199.5
HCH13g1365 . 1 183 C2C2-CO-like Transcription Factor Family AT2G21320 60.1 3.4e-55 211.5
HCH14g0629 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 54.3 6.9e-48 187.2
HCH13g1365 . 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 62.5 3.3e-56 214.9
HCH14g0629 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 56.8 2.4e-51 198.7
HCH7g0529 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.1 2.1e-55 212.6
HCH4g0768 . 1 210 C2C2-CO-like Transcription Factor Family AT4G39070 51.9 1.8e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33169 PF06203 CCT 1.90E-14 CL0281 HCH TR