Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0643 ATGGGTTACATGTGTGATTTCTGTGGGGATCAAAGGTCAATGGTCTACTGTCGGTCTGATGCTGCGTGTTTATGTTTATCGTGTGACCGTAATGTCCACTCAGCCAATGCCCTGTCGAGACGCCACTCGAGAACATTGTTATGTGAAAGATGCAATGTGCAAGCTGCAACAGTTAGATGCATTGAAGAAAGGATTTCTCTCTGTCAGAATTGTGATTGGAATGGTCATGGCACGTCTACCTCTGCTTCATCACACAAGAGGCAAACGATCAATTGTTACTCCGGCTGTCCATCAGCTTCAGAACTGTCGTCTATATGGTCATTTGTTTTGGATTTACCCTCTGTAAATGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCTGAGAATGAGCTGAGGAGTGCCTGGAGCCCTTCTGAGAATTATACTGTCCAAAAAATGCCCAAGCCAGCTGAAGTTAGTGATCTTTGCAGTAGGGAAAAATCAAATGCCTGGATTGGATCGTCTTCGGTTTCTGACTTTGGCTCTAGGCCTCACACTTCAGATCATCCAGTTGAATTGGTTAATGTGGGTCGACCCAAGTATTTCTGCCCTGAAACCAAAGTTTCTGGACTCTGCAGTGATGATGACCTCTGCAAGGAGTATGATATGGATGAAATGAGTTTGAATCTTGAAAACTATGAGGAACTATTTGGTGTAGGCCTTAATTCTGAAGAATTTTTTGAGAATGGTGGAATTGATAGCCTTTTCGAGGCAAAAGACGTGTCTTTTGAAGATTCTATTTGCCAGGGTGCAGTTGCTGCAGAGGGGTCTTCTGTCGGATTGGTTAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGATTCAGTGATGAGTTCTAAAACTGAACCAATTCTTTGTAATTCAAAGCAACCACAAACTGGTCTGTCATTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATTATCAAGATTGTGGAGCCACTTCAATGTTTCTAATGGGAGAGCCTCCCTGGTGTCCCCCTGGCCCTGAAAATTCCTTACCATCTACTGATCGTAATAACGCTGTTCTGCGTTATATGGAAAAGAAGAAGACACGCAAGTTTGAGAAAAGAGTGAGATACGCCACTCGCAAAGCAAGGGCTGATGTCAGGAAGCGTGAGAAGGGACGGTTTGTCAAAGCCGGACATGCATATGATTACGACCCATTGAGCCAAACTAGAAGCTTCTGA 1242 44.36 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNVQAATVRCIEERISLCQNCDWNGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDLPSVNDACEQELGLMSIAENELRSAWSPSENYTVQKMPKPAEVSDLCSREKSNAWIGSSSVSDFGSRPHTSDHPVELVNVGRPKYFCPETKVSGLCSDDDLCKEYDMDEMSLNLENYEELFGVGLNSEEFFENGGIDSLFEAKDVSFEDSICQGAVAAEGSSVGLVKPMQPACSNGASADSVMSSKTEPILCNSKQPQTGLSFSGLTGESSAGDYQDCGATSMFLMGEPPWCPPGPENSLPSTDRNNAVLRYMEKKKTRKFEKRVRYATRKARADVRKREKGRFVKAGHAYDYDPLSQTRSF 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50240050 50243560 + evm.model.ptg000010l.861 HCH2g0643 539868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0643 413 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH2g0643 413 SMART bboxneu5 48 90 IPR000315 GO:0008270(InterPro)
HCH2g0643 413 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH2g0643 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
HCH2g0643 413 CDD Bbox1_BBX-like 47 90 IPR049808 -
HCH2g0643 413 Pfam CCT motif 356 398 IPR010402 GO:0005515(InterPro)
HCH2g0643 413 Pfam ANCHR-like B-box zinc-binding domain 47 86 - -
HCH2g0643 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 402 - -
HCH2g0643 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515(InterPro)
HCH2g0643 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0643 HCH-Chr2:50240050 HCH5g1176 HCH-Chr5:40118108 3.70E-15 dispersed
HCH2g0754 HCH-Chr2:51200939 HCH2g0643 HCH-Chr2:50240050 2.40E-46 transposed
HCH2g0643 HCH-Chr2:50240050 HCH7g0361 HCH-Chr7:2602156 2.80E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33169 PF06203 CCT 1.90E-14 CL0281 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0643 - - - 0.0