Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0653 ATGGCAGATTCAGACAACGAATCAGGAGGACACAACAGCCATGGAAACAGCGAGCTTTCGACAAAAGAACAAGACAGGTTTTTGCCAATAGCTAACGTAAGCAGGATCATGAAGAAAGCACTTCCAGCAAACGCAAAGATCTCCAAAGATGCCAAAGAAACCGTCCAAGAATGTGTCTCTGAGTTCATCAGTTTCATCACCGGCGAAGCTTCCGACAAGTGTCAGAGAGAGAAAAGAAAGACGATCAACGGTGATGATTTGTTGTGGGCCATGACCACTTTGGGTTTTGAAGAGTATGTGGAACCCTTAAAGACTTATCTACAAAAGTATAGGGAGATGGAAGGAGAGAAAACCACTATGGGCAGACAAGGAGAAAAAGATGTTGGAGGTGGGTCCGGTGGTAGTGGTGGTGGCGGCGGAAGTGGTGGTGGGGTCAACTCCTCTAGTGGTGGCGGCGCCGGTGGGGGCTTTAACGGTGTCGGTGGAATGTATGGTAGCATGGTGATGATGGGTCATCATCAGGGACCGGTTTATGGTTCCGGTGGGTTTCACCACATGGGAATTGGCGGCGGCAAGGGTGGTTCCGGTGCCGGCCACCGATAG 603 50.41 MADSDNESGGHNSHGNSELSTKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKTTMGRQGEKDVGGGSGGSGGGGGSGGGVNSSSGGGAGGGFNGVGGMYGSMVMMGHHQGPVYGSGGFHHMGIGGGKGGSGAGHR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50302037 50302639 - evm.model.ptg000010l.851 HCH2g0653 539878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0653 200 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
HCH2g0653 200 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
HCH2g0653 200 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
HCH2g0653 200 FunFam Nuclear transcription factor Y subunit B-3 16 135 - -
HCH2g0653 200 SUPERFAMILY Histone-fold 24 123 IPR009072 GO:0046982(InterPro)
HCH2g0653 200 MobiDBLite consensus disorder prediction 1 17 - -
HCH2g0653 200 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
HCH2g0653 200 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH2g0653 200 MobiDBLite consensus disorder prediction 1 24 - -
HCH2g0653 200 MobiDBLite consensus disorder prediction 115 150 - -
HCH2g0653 200 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0653 200 Gene3D Histone, subunit A 15 130 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0246 HCH-Chr11:2228074 HCH2g0653 HCH-Chr2:50302037 8.40E-46 dispersed
HCH1g0524 HCH-Chr1:54154334 HCH2g0653 HCH-Chr2:50302037 3.50E-44 dispersed
HCH2g0653 HCH-Chr2:50302037 HCH4g0997 HCH-Chr4:6415358 4.20E-41 dispersed
HCH13g1276 HCH-Chr13:40675745 HCH2g0653 HCH-Chr2:50302037 6.40E-46 transposed
HCH2g0653 HCH-Chr2:50302037 HCH6g0875 HCH-Chr6:43600627 7.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33170 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0653 K08065 - csv:101219076 266.159