Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0666 ATGTGGTGGAGGGGTTGTTCTAACAGAGCTGGGGTTTTTCTCAAGCTCTCAAGATTCTTAAGGAGGTGGGATTTAGTGAAGATGTCGATAAGTTGTGAGTTTTCTTCCTCGAATGGGAAATTTCCAGCTAGTTTCAAGTTGAAGAAGGCTAAAGAACGTTTGCGTTTACTGAATTCTAGTGGGAAATGGAAGAAAAAGCTTCTATGGCTTTGGATTTTTGCTTTAGCTATAGTTTTTATCAGTTGGTTTTTCTTGCGTTTGTATAATATGAATTGTGGAACGAAAGAGAATATTTCGAACGTGTTTGATGAAGAAGCTTGGACTTTGCTAGGGCATTTCAATGTTAGCAAGAATCAGATGCATGCTTTAGCTTCGTTGTTCTCCAAATCAGATCGGATATCATTCATCCAGTGCACCAAAGATTTGGGATCTGACACGTCACGGTTGGACGCAATTGCTTGTGCTCTGAAATTACTATACTCGGAAGAAGATTTACGAAAGCAACATATATGGGTTGAAGAAAGTGTAGATTCCAATGTTGCCCAATGCCCAATTCGAACTGAAAAGATTACTAAAAATTATGACCAATTATTCTTTGAGGAGATAATTGAACGAGCAAGGGCGCTAAGATACTGTTTTAAAAGGCATAGGGAGAGTTTCTGTTGTTTGTTAATTGGATGTTTTTCTGTGCTTCTTGGAGTGACGGCATTCCAGAAAAAGCCTGGTTCTCATCTGAAATTGTGTAGCAAGCAAATTCTGAAGTCAAATCAGCCGTTGGTTCATCAACAGTGGATCTTGCTACAGAGAAAACAGCAACAACAGGCCAAAGATACTCCTAAGGGGGCTGGAAAATGGAGGAAGATGCTCCTGAGAATATTTATCATACTTGGGATCATTACGTCCATTTGGTTATTTTGGCACCTGAACAAAAAAATCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGACGAGCGAGCCCGGATGTTGCAGGACCAATTCAATGTGAGCATGAATCATGTTCATGCATTGGCCATTCTTACCTCTACCTTCCATCATGGGAAACAACCTTCTGCCATTGATCAGAAAACATTTGGTGAATATACGGAAAGAACAGCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCCTTAAAAGTTAATCACTCAGAAAGAGAGGAATTTGAGATGAAGCATGGATGGACCATAAAGAAAATGGGGACAGAAGATCAGACTCTTGTTCAAGATTGTATCCCAGAAAATTTGGATCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTCTCTCAAGAAACAGTCTCTCATATAGTTTCTATTGACATGATGTCTGGAAAGGAAGACCGTGAGAACATATTGCGAGCTAGAGCTTCTGGAAAAGGAGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACGTCGGTGTCGTCCTCACTTTTGCCGTCTATAACACTGACCTTCCACCAGGTGCTACTCCAGAGCAACGTATTGAAGCTACTGTTGGTTATCTTGGTGCATCTTATGATGTCCCATCGCTGGTGGAGAAGCTTCTGCATCAACTTGCTAGCAAGCAGACAATTGTTGTGAATGTTTATGATACGACCAATGATTCTGCTCACATCAAGATGTATGGTTCTGATTTTACTGATACCGGGCTACCGCATATCAGTAACCTTGATTTTGGTGATCCGTCAAGAAAGCATGAGATGCATTGTAGATTCAAGAATAAGCCTCCACTTCCTTGGACAGCAATTAATGCATCAGTAGGTGTCTTAATCATTACCTTGCTGGTTGGCCATATTTTTCGAGCGGCCATAAGTCGAATTGCAAGAGTGGAGAATGACTATCACAAGATGATGGGGCTTAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCACAGTTTTTGGCGACGGTTTCCCATGAGATCAGGACACCGATGAATGGTGTTTTAGGCATGCTGCAAATGCTGATGGACACTAACCTTGATGCAAACCAACTGGACTATGCCCAGACGGCTCATGAGAGTGGAAAGGAACTGATATCACTTATAAATAAGGTTCTCGATCAGGCTAAGATAGAATCGGAGAGGCTTGAACTTGAATCTGTACCTTTTGATCTGCGTGCTCTACTTGACAATGTTTTCTCACCCTTTTTAGTCAAATCTAATGAAAAGGGCATCGAGTTGGCCGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATTGGTGACCCCGGACGCTTCCGTCAAATTATTACTCATCTTGTTGGAAATTCAGTTAAGTTTGCTCACAAAAAGGGACACATCTTGGTTTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAATTGACATTATGGACAATGTGCTCAGACAAGGCACACATTTAGTTGGAGATACGCCAAACAATAGTTGTTCTACATTTAGTGGATTACCTGTGGTTGACAGATGGAAAAGCTGGGAGCATTTCAAAAGGTTCAGCAGGATAGATATGGTGGACGAACCTGAAGTGGTTAGAATACTAGTGACTGTTGAGGATACAGGAGTAGGAATTCCCCTAGATGCACAAAGCCGAATTTTCACACCTTTTATGCAGGCGGATAGTTCCACATCACGGACATATGGCGGTACTGGAATAGGATTGAGTATTAGCAAATGTTTGGTGGACCTCATGGATGGGGAGATTGGGTTTGTGAGTAAACCCGGTACAGGTAGCACATTTTCATTTAATGTTTCTTTCCGGAAAGGTGATATAAGTTCTCTGGATGTTAGATGGCAGCAGTATGATCTGGTTGTGTCGGAGTTCCAGGGGTTAAGAGCATTAATAATAGATCATAGCAGCATTCGAGCAGAGATCACAAGATATCATCTGCAGAGGTTGGGGATTTCTGTTGATATAGCTTTGAGTGCAGAATCTGCTTATCGGTATCTATCTAATACTTCTAACACAAGAGCCTCGACACAATTGGCGATGATTTTCATAGACAAAGATGTTTGGGACAAGAAAGTGGGTATTAAGTTCCATCTTTTGTTTAAAGAGCATGTGGATAGAAGTGTGACTGGAGTCCAGATGAATACTCCAAAACTTTTTCTCTTGGCTACCTCCATTAGCTCCAATGAGCGAAATGAACTAAAATCTGCCGGCCATGTAAATGATATATTAATTAAACCTCTTCAGTTAAATGTCTTAGTCAATTGCTTCATAGAAGCCTCTGGAAGTGGGAAGAGGAATCGAGTAATTATCAAAAGACCATCTACTCTTGGGAATATGCTAAAAGAAAAGCGCATTTTGGTTGTGGACGACAATGCAGTTAACAGAAGAGTGGCAGAAAGTACGCTAAAGAAATACGGAGCAATTGTTACTTGTGTAAAAAGTGGAAAGGATGCTGTAACTTTGCTTAAGCCGCCACATAGTTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACGAGGCAGGTCCGCTATGTCGAGAATAGAGTGAATGAGAAAATTGCATCTGGAGAAGTGTCGATTGAGATGTTTGAGAATAAGGTCTATTGGCACACTCCAATTTTAGCTATGACGGCAGATGTAATGCAGGCTACAAATGAACAGTGCTTGAAATGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAAGAGCAACTTTATTCAGCTGTAGCATTCTTTTGTTAG 3732 41.16 MWWRGCSNRAGVFLKLSRFLRRWDLVKMSISCEFSSSNGKFPASFKLKKAKERLRLLNSSGKWKKKLLWLWIFALAIVFISWFFLRLYNMNCGTKENISNVFDEEAWTLLGHFNVSKNQMHALASLFSKSDRISFIQCTKDLGSDTSRLDAIACALKLLYSEEDLRKQHIWVEESVDSNVAQCPIRTEKITKNYDQLFFEEIIERARALRYCFKRHRESFCCLLIGCFSVLLGVTAFQKKPGSHLKLCSKQILKSNQPLVHQQWILLQRKQQQQAKDTPKGAGKWRKMLLRIFIILGIITSIWLFWHLNKKIILRREETLANMCDERARMLQDQFNVSMNHVHALAILTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREEFEMKHGWTIKKMGTEDQTLVQDCIPENLDPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHVGVVLTFAVYNTDLPPGATPEQRIEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNDSAHIKMYGSDFTDTGLPHISNLDFGDPSRKHEMHCRFKNKPPLPWTAINASVGVLIITLLVGHIFRAAISRIARVENDYHKMMGLKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTNLDANQLDYAQTAHESGKELISLINKVLDQAKIESERLELESVPFDLRALLDNVFSPFLVKSNEKGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFAHKKGHILVSVHLADEVRGPIDIMDNVLRQGTHLVGDTPNNSCSTFSGLPVVDRWKSWEHFKRFSRIDMVDEPEVVRILVTVEDTGVGIPLDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMDGEIGFVSKPGTGSTFSFNVSFRKGDISSLDVRWQQYDLVVSEFQGLRALIIDHSSIRAEITRYHLQRLGISVDIALSAESAYRYLSNTSNTRASTQLAMIFIDKDVWDKKVGIKFHLLFKEHVDRSVTGVQMNTPKLFLLATSISSNERNELKSAGHVNDILIKPLQLNVLVNCFIEASGSGKRNRVIIKRPSTLGNMLKEKRILVVDDNAVNRRVAESTLKKYGAIVTCVKSGKDAVTLLKPPHSFDACFMDLQMPEMDGYEATRQVRYVENRVNEKIASGEVSIEMFENKVYWHTPILAMTADVMQATNEQCLKCGMDGYVAKPFEEEQLYSAVAFFC 1243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50453017 50463151 + evm.model.ptg000010l.838 HCH2g0666 539891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0666 1243 FunFam Histidine kinase 4 614 705 - -
HCH2g0666 1243 Gene3D - 1100 1243 - -
HCH2g0666 1243 PRINTS Bacterial sensor protein C-terminal signature 869 879 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH2g0666 1243 PRINTS Bacterial sensor protein C-terminal signature 910 923 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH2g0666 1243 PRINTS Bacterial sensor protein C-terminal signature 851 865 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH2g0666 1243 PRINTS Bacterial sensor protein C-terminal signature 886 904 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH2g0666 1243 Pfam His Kinase A (phospho-acceptor) domain 642 707 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH2g0666 1243 SMART CHASE_2 357 556 IPR006189 -
HCH2g0666 1243 Pfam CHASE domain 360 554 IPR006189 -
HCH2g0666 1243 CDD REC_hyHK_CKI1_RcsC-like 1107 1239 - -
HCH2g0666 1243 ProSiteProfiles Response regulatory domain profile. 950 1082 IPR001789 GO:0000160(InterPro)
HCH2g0666 1243 Gene3D - 708 928 IPR036890 -
HCH2g0666 1243 ProSiteProfiles Response regulatory domain profile. 1106 1243 IPR001789 GO:0000160(InterPro)
HCH2g0666 1243 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 696 922 IPR036890 -
HCH2g0666 1243 Gene3D - 611 705 - -
HCH2g0666 1243 CDD HisKA 642 703 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH2g0666 1243 SMART REC_2 1105 1239 IPR001789 GO:0000160(InterPro)
HCH2g0666 1243 CDD HATPase_EvgS-ArcB-TorS-like 759 920 - -
HCH2g0666 1243 Pfam Response regulator receiver domain 1107 1239 IPR001789 GO:0000160(InterPro)
HCH2g0666 1243 ProSiteProfiles Histidine kinase domain profile. 649 926 IPR005467 -
HCH2g0666 1243 Gene3D - 940 1081 - -
HCH2g0666 1243 SMART HKATPase_4 754 926 IPR003594 -
HCH2g0666 1243 FunFam Histidine kinase 4 361 588 - -
HCH2g0666 1243 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 849 923 IPR003594 -
HCH2g0666 1243 SUPERFAMILY CheY-like 1103 1240 IPR011006 -
HCH2g0666 1243 Gene3D - 91 131 - -
HCH2g0666 1243 Gene3D - 308 360 - -
HCH2g0666 1243 PANTHER TWO-COMPONENT HISTIDINE KINASE 284 1239 IPR050956 -
HCH2g0666 1243 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 632 708 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH2g0666 1243 ProSiteProfiles CHASE domain profile. 357 581 IPR006189 -
HCH2g0666 1243 Gene3D CHASE domain 361 588 IPR042240 -
HCH2g0666 1243 SMART HisKA_10 642 707 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH2g0666 1243 SUPERFAMILY CheY-like 945 1079 IPR011006 -
HCH2g0666 1243 Coils Coil 692 712 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0077 HCH-Chr10:691088 HCH2g0666 HCH-Chr2:50453017 0.00E+00 dispersed
HCH1g0075 HCH-Chr1:6270979 HCH2g0666 HCH-Chr2:50453017 6.70E-273 dispersed
HCH2g0666 HCH-Chr2:50453017 HCH4g1074 HCH-Chr4:6947979 9.00E-25 dispersed
HCH13g1345 HCH-Chr13:41323292 HCH2g0666 HCH-Chr2:50453017 4.10E-38 transposed
HCH2g0666 HCH-Chr2:50453017 HCH7g0328 HCH-Chr7:2343186 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33172 PF03924 CHASE 4.70E-34 CL0165 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0666 K14489 - csv:101221294 1889.0