Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0668 ATGCAAGCTCCACAGCTTCATAGAACTTCACAAATGTCGAAGAGACTGTGTCAACAGCCAGTGCAAGGAGTAGATCAGTACTGCTTCTCCCAATTCCAAAGTTTAGGCCGCCAACTATATTACAATGCCGGCAACCAAAGAGCTCAATTTGATGTTCAAAACATCGGTGATCTGTACTGCACTCTGGAGTCATCCTCAGGAAGTCAAAGCTATGCAGCTCACAACTCACCTTCAACCATTACTTTCTCACCCAATGGAAGTCCAATGTCGCAACAAGATTCTCGTTCAAACCCTACTGATCAGCATAATTCCCCTGACAATACATATGGCTCCCCAGTTAGTGGATCATGCATAACAGATGATATTTGTGATTTTAGGCACAAACTGCGCGAATTGGAAACTGTAATGCTCGGCCCCGATTCTGATATCATTGACAGTTATGATAGTATCTACCAGGATGGAACAGACAATCCAGAGATAGAAAGTTGGGGACATGTGATGGATGCAATCACTAAAGGAAACTTGAAAACGAATCTCATTGCCTGTGCCAAAGCAGTATCAGATAACGATGCATTAATGGCACAATGGCTAATGGATGAATTGCGCAAGATGGTGTCAGTTTGTGGTGAACCGATGCAGAGGTTGGGGGCATATATGCTGGAGGGGCTAGTCGCACGGTTAGCCTCCTCAGGGAGTTGCATCTATAAAGCTTTGAGATGCAAGGAACCAGCGAGTGCAGAACTTCTCTCTTATATGCACATTCTTTATGAGGTTTGCCCATACTTCAAATTTGGATACATGTCTGCGAATGGTGCCATTGCTGAAGCCATAAAAAATGAAGATAGAGTACACATCATTGATTTCCAAATTTCTCAGGGTACTCAATGGATCACTTTAATCCAAGCTTTCGCATGCAGGCCTGGTGGACCTCCTCACATTCGTATAACTGGTATTGATGATCCTGCGTCAGCTTATGCTCGTGGAGGAGGGCTAGATATTGTTGGGAAGAGGCTTTCCAAGTTAGCAAAGTCATGTAAAGTGCCATTTGAGTTTCATTCAGCTGCCATATCTGGCAGTGAGGTTCAGCTAAAGAATCTGGGGGTTCGGCGTGGGGAGGCTCTAGCAGTGAACTTTGCATTTATGCTGCACCATATGCCAGATGAGAGTGTCAGCACTGAAAATCATCGAGATAGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTGGTGACCCTTGTTGAGCAAGAATCCAACACAAACACTGCTGCGTTCTTTCCCCGTTTTATGGAGACACTAGATTACTACAAGGCCATGTTTGAATCAATTGACGTTACTCTCCCAAGAGAGCACAAAGAGCGAATCAGCATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATATTAGCATGTGAAGGAGCCGAGAGAGTGGAACGACATGAGCTACTCGGAAAGTGGAGATCGCGATTCACAATGGCAGGGTTCACTCCTTACCCTTTAAGCTCTTTGGTGAATGCCACCATCAAAACATTATTAGAGAACTATTCTAACAAGTATAGGCTGGAAGAGAGAGAAGGGGTTCTCTACCTAGGCTGGATGAACCGGGATTTGGTTACTTCTTGTGCATGGAAATGA 1638 44.87 MQAPQLHRTSQMSKRLCQQPVQGVDQYCFSQFQSLGRQLYYNAGNQRAQFDVQNIGDLYCTLESSSGSQSYAAHNSPSTITFSPNGSPMSQQDSRSNPTDQHNSPDNTYGSPVSGSCITDDICDFRHKLRELETVMLGPDSDIIDSYDSIYQDGTDNPEIESWGHVMDAITKGNLKTNLIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKALRCKEPASAELLSYMHILYEVCPYFKFGYMSANGAIAEAIKNEDRVHIIDFQISQGTQWITLIQAFACRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKSCKVPFEFHSAAISGSEVQLKNLGVRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFMETLDYYKAMFESIDVTLPREHKERISIEQHCLAREVVNILACEGAERVERHELLGKWRSRFTMAGFTPYPLSSLVNATIKTLLENYSNKYRLEEREGVLYLGWMNRDLVTSCAWK 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50476335 50477972 + evm.model.ptg000010l.836 HCH2g0668 539893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0668 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
HCH2g0668 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 544 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH2g0668 545 MobiDBLite consensus disorder prediction 70 113 - -
HCH2g0668 545 Pfam GRAS domain family 176 545 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0186 HCH-Chr11:1806500 HCH2g0668 HCH-Chr2:50476335 2.10E-61 dispersed
HCH13g0493 HCH-Chr13:3437958 HCH2g0668 HCH-Chr2:50476335 5.10E-60 dispersed
HCH2g0668 HCH-Chr2:50476335 HCH3g1373 HCH-Chr3:51501680 1.10E-59 dispersed
HCH12g1143 HCH-Chr12:9150900 HCH2g0668 HCH-Chr2:50476335 1.40E-140 transposed
HCH12g1405 HCH-Chr12:36902257 HCH2g0668 HCH-Chr2:50476335 3.60E-122 transposed
HCH13g0114 HCH-Chr13:719681 HCH2g0668 HCH-Chr2:50476335 1.50E-39 transposed
HCH5g0825 HCH-Chr5:6541362 HCH2g0668 HCH-Chr2:50476335 1.00E-59 transposed
HCH7g0209 HCH-Chr7:1426926 HCH2g0668 HCH-Chr2:50476335 2.10E-45 transposed
HCH14g0760 HCH-Chr14:35787190 HCH2g0668 HCH-Chr2:50476335 8.80E-174 wgd
HCH2g0668 HCH-Chr2:50476335 HCH6g0857 HCH-Chr6:43379011 3.40E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33173 PF03514 GRAS 1.60E-138 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0668 K27748 - csv:101221914 962.6