Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0669 ATGCCTGATGACAATTCAATTCCAATTGATCGAGATGCGGAGCCTTTTGTTGAGGTTGATCCAACTCGACGGTTTGGACGATACAATGATCTCCTTGGATCTGGGGCAGTGAAGAGAGTGTATAGGGCATTTGATCAGGAGGAAGGAATTGAAGTTGCTTGGAATCAGGTTCGCTTGAGAAACTTTAGTGGGGATCCGGTGTTCATCAACAGGCTTCGATCGGAGGTTCAGCTTTTGAGCACGTTGAGCAACAAATATATCATTGTTTGTTACAATGTTTGGCATGATGAGGAGCACAATACATTGAATTTCATTACAGAGGTGTGCACATCAGGAAATTTGAGGGATTATCGTAAGAAACATCGGCATGTATCTATTAAAGCCTTGAAGAAGTGGTCTAAGCAGGTACTTGAGGGATTGGATTATCTGCATACTCATGACCCTTGCATTATTCACAGAGATCTCAATTGTAGTAACATATTCGTCAATGGGAACATCGGCCAGGTCAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAGGAGTCATGCTGCGCATTCAATCATAGGCACTCCAGAATATATGGCACCAGAACTGTACGAGGAAGATTATACCGAGATGGTGGATATATATTCCTTTGGAATGTGTTTGCTCGAGATGGTTACTATGGAGATACCATACAGTGAATGTGACAGTGTTGCCAAGATATACAAGAAGGTGACCAGCGGAATCAAGCCCCAAGCATTAAACCAAGTGACCGATCCCGAAGTTAGGGCTTTTATTGAGAAGTGCATTGCACAACCAAGGGCAAGACCTTCTGCTTCTGAACTTCTCAAGGATCCCTTCTTTTCTGAAGTCGGTGATGAAGACTCTGAACAGACTAGTTAA 891 42.99 MPDDNSIPIDRDAEPFVEVDPTRRFGRYNDLLGSGAVKRVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLSNKYIIVCYNVWHDEEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTSGIKPQALNQVTDPEVRAFIEKCIAQPRARPSASELLKDPFFSEVGDEDSEQTS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50484988 50486486 + evm.model.ptg000010l.835 HCH2g0669 539894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0669 296 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
HCH2g0669 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH2g0669 296 CDD STKc_WNK 24 284 - -
HCH2g0669 296 MobiDBLite consensus disorder prediction 271 296 - -
HCH2g0669 296 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
HCH2g0669 296 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
HCH2g0669 296 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0669 296 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
HCH2g0669 296 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
HCH2g0669 296 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0669 HCH-Chr2:50484988 HCH6g0855 HCH-Chr6:43362482 2.30E-128 dispersed
HCH2g0669 HCH-Chr2:50484988 HCH6g0854 HCH-Chr6:43323722 3.20E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81322 PF00069 Pkinase 5.20E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0669 K08867 - csv:101222153 571.237