Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0686 ATGCCAAAGAACAAGGGAAAGGGAGGTAAGAACAGGAAGAGGGGAAAGAATGAAGCAGATGATGAGAAGCGTGAGCTTGTTTTCAAGGAAGATGGACAGGAGTATGCACAAGTACTCCGAATGCTAGGTAATGGCCGATGTGAGGCCACGTGCATAGATGGCACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAGAAGGTCTGGATTGCAGCGGGTGATATTATACTTGTTGGTCTTCGTGACTATCAAGATGACAAAGCTGATGTTATCCTCAAGTACATGCCCGATGAAGCCAGGCTTTTGAAGGCTTATGGTGAGCTTCCTGAGAATACACGTCTCAATGAGGGTATTGCTGGCGTTATTGATGATGATGATGTTAACAGCGGTGATGATTATCTTGAGTTCGAGGATGAAGATATTGATAAGATTTAG 438 44.98 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGVIDDDDVNSGDDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50693321 50693758 - evm.model.ptg000010l.818 HCH2g0686 539911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0686 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)
HCH2g0686 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 SUPERFAMILY Nucleic acid-binding proteins 2 143 IPR012340 -
HCH2g0686 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 Gene3D - 2 145 IPR012340 -
HCH2g0686 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
HCH2g0686 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0686 145 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0686 HCH-Chr2:50693321 HCH7g1673 HCH-Chr7:48713826 1.10E-70 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0686 K03236 - vvi:100252402 264.618