Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0698 ATGATGCAAAAAATGGCTGATCAAGAAGAATTCTCAAACTGCTTTCTCCAAATCCCAGTTGCTGGATATAACCCTACTTCTCTAGGAAAGAAGAGGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAAGTGATAGCTTTATCACCCAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTATGTGGGAAAGGATTTCAAAGAGATCAAAACCTACAGCTTCACAGAAGAGGACATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAGCCAAGAAAGAGGGTGTATGTATGTCCTGAAAAGAGCTGTGTTCATAATCATCCATCAAGGGCACTTGGAGACCTTACAGGGATAAAGAAACACTTTTGCAGAAAGCATGGAGAAAAGAAGTGGAAGTGTGACAAATGCTCTAAGAGATATGCTGTGCAGTCTGATTGGAAAGCTCATTCTAAAACCTGTGGCACTCGTGAATACAAATGTGACTGTGGGACTCTCTTTTCGAGGAGAGATAGCTTCATCACACACAGGGCCTTCTGCGATGCCTTGGCTGAAGAAACAGCAAGAGTAAATGCAGTTACAACAATAACTAATAACATGACTGCGGCCACGGCCTCGGATTTCAATTATCATTTCATGGCCGGAGCAACGCAAGGACCGCCGAGCTTTATGGTGCCGCATAATTTCTCCTCTATTTTCAAGCCAATCTCAGGGAATGACTCAGGACTATTAAACCAAACAACAATGAATGATGGCATCTCTTTGAGAAGTAGTAACGGTCTCCAAGAAATTCATCAACAGCTTGGATCAGTAAGTTCAGGATCAGTATTTTGTGACCCTCTATTGAATTCTTCTCCAATTCCTCCACCATCTGATCATCATCATAATATGAATTGGATCTTTGAGGCAAAGGTAATTTCTCCAAACAATAATAATAATGGTCAAGATGATCAAGAGTTAAGGAGCTGCAAAACCAGTACTCTTCCATTTTGTGATGTGAAAGAGTCAGGAAATCAGCAGCTGGTAAGTGCTTCTTCCTTATATAGCAACCAATTGCAACAATTCAATCAGACCCACATAGCAAATATGTCAGCCACTGCTTTGTTGCAAAAAGCAGCCCAAATTGGGGCAACTTCTAGTTCTGAGCCACCATTATTCCAAGCGGGTTTTATGTTCAAGTGTAGTGATGGTACTACGGCTCAAAATGGGAACAAATCTTGTGTGTTTTCTAGTACAAACCCAATAATGCAGACTGTTTCTAGTCTTGTAAATGAAGTGGAGGACTCGGTAGGCAATTTGGTGCATATGCAGGCCTACCCTGCGAAACGCCGGCGCGCACAGATCGAAGAGGGTGTTGTTGCAAATGCAGGAGGGCAGACTAGAGATTTTCTTGGCGTTGGTGTCCACAGCACACTATCATCAGTCACGCATCAACAATCAACAAATGGATTTAGTTTTTCGTATTGA 1476 42.14 MMQKMADQEEFSNCFLQIPVAGYNPTSLGKKRRNLPGNPDPEAEVIALSPKTLMATNRFVCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAVTTITNNMTAATASDFNYHFMAGATQGPPSFMVPHNFSSIFKPISGNDSGLLNQTTMNDGISLRSSNGLQEIHQQLGSVSSGSVFCDPLLNSSPIPPPSDHHHNMNWIFEAKVISPNNNNNGQDDQELRSCKTSTLPFCDVKESGNQQLVSASSLYSNQLQQFNQTHIANMSATALLQKAAQIGATSSSEPPLFQAGFMFKCSDGTTAQNGNKSCVFSSTNPIMQTVSSLVNEVEDSVGNLVHMQAYPAKRRRAQIEEGVVANAGGQTRDFLGVGVHSTLSSVTHQQSTNGFSFSY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50767069 50769112 - evm.model.ptg000010l.806 HCH2g0698 539923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0698 491 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 199 - -
HCH2g0698 491 Gene3D Classic Zinc Finger 55 82 - -
HCH2g0698 491 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
HCH2g0698 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
HCH2g0698 491 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
HCH2g0698 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 477 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH2g0698 491 FunFam protein indeterminate-domain 12-like 38 106 - -
HCH2g0698 491 Gene3D Classic Zinc Finger 92 183 - -
HCH2g0698 491 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
HCH2g0698 491 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
HCH2g0698 491 SMART c2h2final6 59 81 IPR013087 -
HCH2g0698 491 SMART c2h2final6 135 155 IPR013087 -
HCH2g0698 491 SMART c2h2final6 100 130 IPR013087 -
HCH2g0698 491 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
HCH2g0698 491 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0500 HCH-Chr12:2934064 HCH2g0698 HCH-Chr2:50767069 8.60E-85 dispersed
HCH2g0698 HCH-Chr2:50767069 HCH9g0599 HCH-Chr9:4017327 5.80E-92 dispersed
HCH13g1282 HCH-Chr13:40802723 HCH2g0698 HCH-Chr2:50767069 2.20E-86 transposed
HCH7g0854 HCH-Chr7:23632664 HCH2g0698 HCH-Chr2:50767069 8.80E-88 transposed
HCH2g0698 HCH-Chr2:50767069 HCH7g0286 HCH-Chr7:2016471 3.80E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33177 PF00096 zf-C2H2 0.0032 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0698 K25870 - vvi:100252370 510.76