Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0701 ATGCCAAAGGGTTTGAAGAGCCAGTGCCAGTCTACTTCTCATGAGCTTTTGAAAGAAAAAGCGAAGAATCGTGTTAATGACCTTCAAGGGTTGTTCACTAATCTTCAATCAGCAAGGAAGGAGAGTCGTACTAATGATGTTGCTGTATTCGAAGAGCAAGTGATTCATATGCTCAGGGAGTGGAATGCTGAGCTCAATGAGCCATCGCCTGCTTCTTCGTTATTTGGTGGCAGTCATGGATCATTCTCGGAGGAATTAGCCCGTCTTCTTGGGCATTGTGATGAGGAAGATGATGCGACTAGTACATTGGCTGGACCAAAGCCTGAGCCTGATTTTCAATGCCTTCATGTCAGCAATTTGTTGGATCTTCAGCATGTGGAGCTCCAACATGGTTTCCCTGGATTTGAAGAAAGCAAGGTTTCTGCTTCAAATCAGCAGAATTATATGTTATTTAAGTCAGATATGACTAGTCATTCTGATTGTCAAAATTTCAATTTATATCAGAACTTTGAGCAGAACATGGTGGCTGGTAAGGATGATATGTCTAATTTGGATTGCCATATATTGGATTCAAATCAAGACTTCGATTATGGGCTTCTTTCTGAGGCATATGAGGCTGGAAACTTTATCCAGGACACAAAGCCCAGCATTCTTCCAGATATCTCACCCCCACCATCTGCTTATATGGGGCCAATATGTGCTCTCTGGGATTGTTTCAGACCTGCTCAAGGATCTAAATTGTGCCAGGACTATTGCAGTAGCTCTCATTCTATTCTTGCATTAAATGAAGGCCTTCTAGGAATGCCTCCAATTTTGCGTCCTGGAGGCATTGGCTTGAAGGATGGTCCACTCTTTGCTGCTCTTCATGCAAAGACAGAGGCTAAAGAAGTTGGAATTCCTACATGTGACGGTGCTGCATCTATGAAATCTCCATGGAATGCTCCTGAACTGTTTGATATTTTATTACTTGAAGGTGAGACAATCAGGGAATGGCTTTATTTTGACAAGCCTAGACGGGCCTTTGAGAGTGGCAATAGAAAGCAAAGGTCATTGCCAGATTATAGAGGCCGTGGTTGGCATGAATCAAGAAAGCAGGTGGTGAAGGAGTTTGGTGGACATAAGAAGTCATATTACATGGATCCACAGCCATCGAACTCCCTTGAATGGCATTTATATGAATATGATATCAGCAATTACGATTCATTTGCATTATACAGGCTGGAACTCAAGCATGCCGATACAAAGAAGAGTCCCAAGGGGAAAGTGACCACCGATCCTCTTGCTGATCTGCAGAATAAGATGGGGAAGCTTACTGCAGAGGGACCTGTTGAGCTTGGACAATCAGTTAAGGGCAAGACGAAGGCTAATAAAAAGGCTGATATTGTAAATAAGGATCTTGTTCTCTGTCAACAGGATACCTCTATAACTGAAGCATCTAATATTGGTAAAGATGCTGATGTAATCAGCATACCATCTGGTCCCAACTGA 1488 42.67 MPKGLKSQCQSTSHELLKEKAKNRVNDLQGLFTNLQSARKESRTNDVAVFEEQVIHMLREWNAELNEPSPASSLFGGSHGSFSEELARLLGHCDEEDDATSTLAGPKPEPDFQCLHVSNLLDLQHVELQHGFPGFEESKVSASNQQNYMLFKSDMTSHSDCQNFNLYQNFEQNMVAGKDDMSNLDCHILDSNQDFDYGLLSEAYEAGNFIQDTKPSILPDISPPPSAYMGPICALWDCFRPAQGSKLCQDYCSSSHSILALNEGLLGMPPILRPGGIGLKDGPLFAALHAKTEAKEVGIPTCDGAASMKSPWNAPELFDILLLEGETIREWLYFDKPRRAFESGNRKQRSLPDYRGRGWHESRKQVVKEFGGHKKSYYMDPQPSNSLEWHLYEYDISNYDSFALYRLELKHADTKKSPKGKVTTDPLADLQNKMGKLTAEGPVELGQSVKGKTKANKKADIVNKDLVLCQQDTSITEASNIGKDADVISIPSGPN 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50798410 50800936 + evm.model.ptg000010l.803 HCH2g0701 539926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0701 495 Coils Coil 18 38 - -
HCH2g0701 495 PANTHER TRANSCRIPTION FACTOR VOZ1 1 475 IPR039277 GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0045893(PANTHER)|GO:0048578(InterPro)|GO:0048578(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0701 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0953 HCH-Chr14:37046434 HCH2g0701 HCH-Chr2:50798410 9.60E-140 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0953 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 70.6 1.8e-199 692.2
HCH2g0701 . 6 458 VOZ-9 Transcription Factor Family AT1G28520 55.0 1.8e-133 473.0
HCH14g0953 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 50.7 1.0e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33178 None None None None HCH TF