Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0714 ATGGAACGAGAACCTAGTAGTGGAAGTTCTTCCATAATTGGGAGTGGAAAATCAGGATCTTCTTCCTTTAGTAAGATGATGACTATGGTGCCGCCATTAATAAACCCTGAATCAGAAATGCATCAAAGGCTTTTTCTTCCCTTTCCATGGACCCACTCCATGGACGACGACAACAACAACAACGTTAACAATCAAGAAAACATCAGTGGTGGCTGTAATATGAAGGCTAAGATCATGTCTCATCCTCTCTTTCCTCGCCTCTTGACTGCTTATGGAAACTGCCAGAAGATTGGAGCGCCACCGGAAGTGGCGGCAGGGATAGATCGGGCATGTGCAAATACGGAAGCGGCGACGGCGTTTGCTAGGTCAGGAGGTTGTGGTGATGACGATCCTGGGCTTAACCAGTTCATGGAGGCCTATTGTGAGATGCTCAGTAAATATGAGCAAGAGCTCACCAAACCCTTGAAAGAAGCTATGATTTTCTTTTCCAAAATTGAGACTCAGCTTCATGCCCTAGCTGCTGCTTCTGATTATGTATCTGAGTTCAATAATGTGAGCAATGGAGCATGTTCCCAAGAATTAGGTGAGTTAAATGGGAATGAGAACCTTGTGGATCCAGAAGCTGAAGACAGGGACCTAAAGATTCAGCTTCTGCGCAAATATAGCGGATACGTGGGATGTCTGAAGCAGGAATTTATGAAGAAGAAAAAGAATGGAAAGTTGCCAAAAGAAGCTCGTCAACAGTTGCTTGATTGGTGGAACAAACATTACAAATGGCCTTATCCATCGGAGTCAGAAAAGATGGGGCTTGCAGAATGCACAGGATTAGATCTGAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAACGACATTGGAAGCCTTCAGAAGATATGCAGTTTGTTATAATGGATGGAAATGATCATAATCATAATCCTCATCCTCATCCTCGCTACTACTTTGACAATCTTCTCAGCAGCACCCATTTCCCTATGGATTGCTCCACTACTTTCACTGATTATACCTGA 1029 43.44 MEREPSSGSSSIIGSGKSGSSSFSKMMTMVPPLINPESEMHQRLFLPFPWTHSMDDDNNNNVNNQENISGGCNMKAKIMSHPLFPRLLTAYGNCQKIGAPPEVAAGIDRACANTEAATAFARSGGCGDDDPGLNQFMEAYCEMLSKYEQELTKPLKEAMIFFSKIETQLHALAAASDYVSEFNNVSNGACSQELGELNGNENLVDPEAEDRDLKIQLLRKYSGYVGCLKQEFMKKKKNGKLPKEARQQLLDWWNKHYKWPYPSESEKMGLAECTGLDLKQINNWFINQRKRHWKPSEDMQFVIMDGNDHNHNPHPHPRYYFDNLLSSTHFPMDCSTTFTDYT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 50858052 50860692 + evm.model.ptg000010l.790 HCH2g0714 539939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0714 342 Gene3D - 230 301 - -
HCH2g0714 342 SMART HOX_1 234 299 IPR001356 GO:0003677(InterPro)
HCH2g0714 342 ProSiteProfiles 'Homeobox' domain profile. 232 295 IPR001356 GO:0003677(InterPro)
HCH2g0714 342 ProSiteProfiles ELK domain profile. 212 232 IPR005539 GO:0003677(InterPro)
HCH2g0714 342 SMART KNOX2_2 123 174 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH2g0714 342 Pfam Homeobox KN domain 252 291 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH2g0714 342 Pfam KNOX1 domain 74 113 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH2g0714 342 Pfam ELK domain 212 233 IPR005539 GO:0003677(InterPro)
HCH2g0714 342 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 302 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH2g0714 342 Pfam KNOX2 domain 129 172 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH2g0714 342 MobiDBLite consensus disorder prediction 1 24 - -
HCH2g0714 342 SUPERFAMILY Homeodomain-like 234 305 IPR009057 -
HCH2g0714 342 ProSitePatterns 'Homeobox' domain signature. 270 293 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH2g0714 342 SMART KNOX1_2 72 116 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH2g0714 342 CDD homeodomain 244 296 IPR001356 GO:0003677(InterPro)
HCH2g0714 342 SMART ELK_2 212 233 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0714 HCH-Chr2:50858052 HCH4g0559 HCH-Chr4:3620026 5.80E-67 dispersed
HCH14g0789 HCH-Chr14:35952103 HCH2g0714 HCH-Chr2:50858052 7.20E-84 wgd
HCH2g0714 HCH-Chr2:50858052 HCH7g0260 HCH-Chr7:1790952 3.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33181 PF03791 KNOX2 8.90E-20 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0714 - - - 0.0