Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0714 | ATGGAACGAGAACCTAGTAGTGGAAGTTCTTCCATAATTGGGAGTGGAAAATCAGGATCTTCTTCCTTTAGTAAGATGATGACTATGGTGCCGCCATTAATAAACCCTGAATCAGAAATGCATCAAAGGCTTTTTCTTCCCTTTCCATGGACCCACTCCATGGACGACGACAACAACAACAACGTTAACAATCAAGAAAACATCAGTGGTGGCTGTAATATGAAGGCTAAGATCATGTCTCATCCTCTCTTTCCTCGCCTCTTGACTGCTTATGGAAACTGCCAGAAGATTGGAGCGCCACCGGAAGTGGCGGCAGGGATAGATCGGGCATGTGCAAATACGGAAGCGGCGACGGCGTTTGCTAGGTCAGGAGGTTGTGGTGATGACGATCCTGGGCTTAACCAGTTCATGGAGGCCTATTGTGAGATGCTCAGTAAATATGAGCAAGAGCTCACCAAACCCTTGAAAGAAGCTATGATTTTCTTTTCCAAAATTGAGACTCAGCTTCATGCCCTAGCTGCTGCTTCTGATTATGTATCTGAGTTCAATAATGTGAGCAATGGAGCATGTTCCCAAGAATTAGGTGAGTTAAATGGGAATGAGAACCTTGTGGATCCAGAAGCTGAAGACAGGGACCTAAAGATTCAGCTTCTGCGCAAATATAGCGGATACGTGGGATGTCTGAAGCAGGAATTTATGAAGAAGAAAAAGAATGGAAAGTTGCCAAAAGAAGCTCGTCAACAGTTGCTTGATTGGTGGAACAAACATTACAAATGGCCTTATCCATCGGAGTCAGAAAAGATGGGGCTTGCAGAATGCACAGGATTAGATCTGAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAACGACATTGGAAGCCTTCAGAAGATATGCAGTTTGTTATAATGGATGGAAATGATCATAATCATAATCCTCATCCTCATCCTCGCTACTACTTTGACAATCTTCTCAGCAGCACCCATTTCCCTATGGATTGCTCCACTACTTTCACTGATTATACCTGA | 1029 | 43.44 | MEREPSSGSSSIIGSGKSGSSSFSKMMTMVPPLINPESEMHQRLFLPFPWTHSMDDDNNNNVNNQENISGGCNMKAKIMSHPLFPRLLTAYGNCQKIGAPPEVAAGIDRACANTEAATAFARSGGCGDDDPGLNQFMEAYCEMLSKYEQELTKPLKEAMIFFSKIETQLHALAAASDYVSEFNNVSNGACSQELGELNGNENLVDPEAEDRDLKIQLLRKYSGYVGCLKQEFMKKKKNGKLPKEARQQLLDWWNKHYKWPYPSESEKMGLAECTGLDLKQINNWFINQRKRHWKPSEDMQFVIMDGNDHNHNPHPHPRYYFDNLLSSTHFPMDCSTTFTDYT | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 50858052 | 50860692 | + | evm.model.ptg000010l.790 | HCH2g0714 | 539939 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0714 | 342 | Gene3D | - | 230 | 301 | - | - | |
HCH2g0714 | 342 | SMART | HOX_1 | 234 | 299 | IPR001356 | GO:0003677(InterPro) | |
HCH2g0714 | 342 | ProSiteProfiles | 'Homeobox' domain profile. | 232 | 295 | IPR001356 | GO:0003677(InterPro) | |
HCH2g0714 | 342 | ProSiteProfiles | ELK domain profile. | 212 | 232 | IPR005539 | GO:0003677(InterPro) | |
HCH2g0714 | 342 | SMART | KNOX2_2 | 123 | 174 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH2g0714 | 342 | Pfam | Homeobox KN domain | 252 | 291 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH2g0714 | 342 | Pfam | KNOX1 domain | 74 | 113 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH2g0714 | 342 | Pfam | ELK domain | 212 | 233 | IPR005539 | GO:0003677(InterPro) | |
HCH2g0714 | 342 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 113 | 302 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH2g0714 | 342 | Pfam | KNOX2 domain | 129 | 172 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH2g0714 | 342 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
HCH2g0714 | 342 | SUPERFAMILY | Homeodomain-like | 234 | 305 | IPR009057 | - | |
HCH2g0714 | 342 | ProSitePatterns | 'Homeobox' domain signature. | 270 | 293 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH2g0714 | 342 | SMART | KNOX1_2 | 72 | 116 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH2g0714 | 342 | CDD | homeodomain | 244 | 296 | IPR001356 | GO:0003677(InterPro) | |
HCH2g0714 | 342 | SMART | ELK_2 | 212 | 233 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0714 | HCH-Chr2:50858052 | HCH4g0559 | HCH-Chr4:3620026 | 5.80E-67 | dispersed | |
HCH14g0789 | HCH-Chr14:35952103 | HCH2g0714 | HCH-Chr2:50858052 | 7.20E-84 | wgd | |
HCH2g0714 | HCH-Chr2:50858052 | HCH7g0260 | HCH-Chr7:1790952 | 3.40E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33181 | PF03791 | KNOX2 | 8.90E-20 | No_clan | HCH | TF |
Pathway information
