Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0741 ATGAAGAAGTTATTGATTAGTTTGATATGGGCATTTCTTGCTGGTTTTGCTTGTTGCCAAAGGCCAGCAGTTGTGAACATTGGTGCAGTTTTTACTTTTGATTCTGTTATAGGAAGAGCTGCTATGGTGGCAATGGAAGCCGCCGTTGCCGATGTCAATGCCGATCCTGCTATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATGCTCATTGTAATGTTCTCTTGGGTTCCTTTGGAGCTTTCCAGGTACTTCAGAAAGAGGTAGTGGCTGTCATCGGGCCTCAATCTTCGGCTATAGCTCATATGATTTCACAGATAGCTAATAATCTCCAAGTGCCTCTTATATCTTATGCTGCTACTGATCCAACTTTATCTGCTCTCCAATTCCCTTTTTTTCTAAGAACTGCTCAGAGTGACTCCTATCAAATGGCTGCTATGGCAGAACTAATCGATTTTCATGAGTGGAAAGAGGTGATCATTATCTTTGTGGATGATGATTATGGTAGAAATGGAGTATCTGCTTTAGATAATGAGCTCGAGAGGAAAATGTTTAAAATTTCTTACAAAATTCCCTTGCCTTCTCAGTTTAATCTCAGTGAAACCACAGATAGGCTTAATAAAACCAAGTTTCTTGGTCCTCGTGTCTATGTCGTTCATATCAATCCGGATCCTAGATTAAGAATCTTCAAATTAGCTCATAAACTTGGTATGATGACAAACAATTATGTGTGGCTTGCAACAGATTGGCTTTCTACTACCCTAGATTCATTTCCTCCCACGAACCGAAACTCTCTTAGCATCCTGCACGGAGTGGTTGTACTTCGTCAACATACTCCCGAGTCCAGCCGTAAGACAGATTTATGGTCGCGGTTAAGGAAGAAGCAGCAGGAAGGCTCCAAAAGTTCTTTATTGAATGTCTATGCTCTTAATGCTTATGATAGCATTCAAGTAGTTGCTCATTCAATTGATAAGTTTCTAAATGGAAGCAGGAGTATTACATTCTCTTTGAAGGACAAATTTCATGACTTGAATACATCTAGAATGCCTTGGGGGAAGCTCAAAATCTTTGATGATGGTGCTCTTCTTTTGAACATATTGTTACAGACAAACTTTTCTGGTTTAACCGGTCGAATTGAGTTTAATTCAGATCGGAACATTGTCAGTGGAGGCTACGACGTGATCAATATAGATCAGATGACATTACGTACGGTCGGTTATTGGTCTAATATTACAGGCTTTACAATTGCATCACCAGAAACTCTGGAAGAGGAAAAAATTGTCTATACCCGCCTGAACCAGACTCTTGGCTATGTTACCTGGCCCGGTGGAAAGACAAAACGACCACGCGGGTGGGTAATTGCACACAATGAAAAGCCATTAAGAATTGGAGTTCCACTTAGAGTAAGTTTCATTGAATTTGTTACAGCAGTTAATGGAAGTAACGAAAACATCCAAGGATATTGTATCGATCTATTTGATGAAGCAAGAAAGTTAGTCCCATATGATATTCCTTACAGATTTGTGCCTTTTGGTAATGGCCACTCCAATCCCAGTTATAATGATCTTGTAAAGAATGTTGCAGATGGGATTTTTGATGCAGCTGTTGGAGATATTGCAATTGTAACGAATCGCACAAAGGTTGTCGATTTTTCTCAGCCTTTTGCTGCTACTGGACTGGTGATTGTGGCTCCAATCACGAATTCGAAGTCAAGTGCCTGGGTGTTCATTAAACCATTTACAGTAGAGATGTGGTGTGTTACTGCAGGCTCCTTTTTTATGATTGGTGCAGTTATATGGATTCTTGAGCATCGAGTTAATGATGATTTCCGTGGTCCTCCTAGGAGGCAGCTAGTGACAGCAATATTGTTCAGCTTCTCGACGCTGTTTAAGACAAATCAGGAAGATACCGTAAGTCCACTCGGGCGGATGGTAATGGTGGTGTGGCTTTTCTTATTAATGGTTATCACATCAAGTTATACAGCAAGTCTGACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATCAAAGGGCTTGATGACTTAATTGCTAGTGAACGGTCGATCGGCTACCAGGTAGGATCGTTTGCTTACAGCTACTTAACCCAGAGCCTTTACATACCTGGCTCAAGACTTATTCCTCTAGGCTCTCCAGAAGAGTATGAATTAGCACTGCTCAAAGGGCCATACAAAAAAGGTGGGGTGGCAGCTATTATAGACGAACTTCCATACATGGAGTTATTCTTATCAAGCAGGCCTGATTTCGGAATCATCGGACAGCCATTTACCAAGAGCGGGTGGGGATTCGCTTTCCGGAGGGGATCTCCTCTTGCGGTAGACATGTCGACCGCAATTTTAAAGCTATCGGAGAATGGAAAGCTGCAGAAGATCCATGAGAAGTGGTTTTGCAAGATGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGCCTAACCAACTTCACTTGATGAGCTTCTGGGGTTTATATCTCTTGTGTGGTTCCTTTTGCCTTGCTGCTCTTCTTATATTTTTGCTCCGAATCGTTCGACAATTCGCTCGCTACATACGACAACAGAAAGAATCTTCTTCTCATGCAGACATTGACATGGTATCATCAAATTCAAGCTGGTCTCAGGTTATTTACAACTTCATCAGCTTTGTTGATGAAAAGGAAGAAGCCATCAAGAGGCTTTTTCGAAAGCAGGATACTCAGAATCAAGCTAAATGA 2733 41.57 MKKLLISLIWAFLAGFACCQRPAVVNIGAVFTFDSVIGRAAMVAMEAAVADVNADPAILNGTKLNLVMADAHCNVLLGSFGAFQVLQKEVVAVIGPQSSAIAHMISQIANNLQVPLISYAATDPTLSALQFPFFLRTAQSDSYQMAAMAELIDFHEWKEVIIIFVDDDYGRNGVSALDNELERKMFKISYKIPLPSQFNLSETTDRLNKTKFLGPRVYVVHINPDPRLRIFKLAHKLGMMTNNYVWLATDWLSTTLDSFPPTNRNSLSILHGVVVLRQHTPESSRKTDLWSRLRKKQQEGSKSSLLNVYALNAYDSIQVVAHSIDKFLNGSRSITFSLKDKFHDLNTSRMPWGKLKIFDDGALLLNILLQTNFSGLTGRIEFNSDRNIVSGGYDVINIDQMTLRTVGYWSNITGFTIASPETLEEEKIVYTRLNQTLGYVTWPGGKTKRPRGWVIAHNEKPLRIGVPLRVSFIEFVTAVNGSNENIQGYCIDLFDEARKLVPYDIPYRFVPFGNGHSNPSYNDLVKNVADGIFDAAVGDIAIVTNRTKVVDFSQPFAATGLVIVAPITNSKSSAWVFIKPFTVEMWCVTAGSFFMIGAVIWILEHRVNDDFRGPPRRQLVTAILFSFSTLFKTNQEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLIASERSIGYQVGSFAYSYLTQSLYIPGSRLIPLGSPEEYELALLKGPYKKGGVAAIIDELPYMELFLSSRPDFGIIGQPFTKSGWGFAFRRGSPLAVDMSTAILKLSENGKLQKIHEKWFCKMGCPGERRRKSEPNQLHLMSFWGLYLLCGSFCLAALLIFLLRIVRQFARYIRQQKESSSHADIDMVSSNSSWSQVIYNFISFVDEKEEAIKRLFRKQDTQNQAK 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51074149 51078432 + evm.model.ptg000010l.763 HCH2g0741 539966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0741 910 CDD GluR_Plant 460 804 - -
HCH2g0741 910 FunFam Glutamate receptor 700 808 - -
HCH2g0741 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 25 869 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH2g0741 910 Gene3D - 43 390 - -
HCH2g0741 910 Gene3D - 574 706 - -
HCH2g0741 910 Pfam Receptor family ligand binding region 42 399 IPR001828 -
HCH2g0741 910 Pfam Ligated ion channel L-glutamate- and glycine-binding site 481 565 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH2g0741 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 229 252 - -
HCH2g0741 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 38 54 - -
HCH2g0741 910 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 98 126 - -
HCH2g0741 910 FunFam Glutamate receptor 457 574 - -
HCH2g0741 910 Gene3D - 454 573 - -
HCH2g0741 910 Pfam Ligand-gated ion channel 583 835 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH2g0741 910 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
HCH2g0741 910 FunFam Glutamate receptor 140 299 - -
HCH2g0741 910 Gene3D - 756 811 - -
HCH2g0741 910 FunFam Glutamate receptor 574 704 - -
HCH2g0741 910 Gene3D - 140 414 - -
HCH2g0741 910 SMART GluR_14 463 806 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH2g0741 910 SUPERFAMILY Periplasmic binding protein-like II 435 804 - -
HCH2g0741 910 PIRSF IGluLR_plant 1 910 IPR017103 -
HCH2g0741 910 SUPERFAMILY Periplasmic binding protein-like I 18 454 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0741 HCH-Chr2:51074149 HCH7g0393 HCH-Chr7:2827069 2.10E-225 dispersed
HCH2g0741 HCH-Chr2:51074149 HCH2g0742 HCH-Chr2:51087788 1.70E-246 tandem
HCH2g0741 HCH-Chr2:51074149 HCH7g0232 HCH-Chr7:1548066 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0741 K05387 - csv:101215715 1491.86