Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0742 ATGGAGTTCTTCTGGATTAGGAGGCGTTTTCGTTGGGTCAGGACTGGATTACTGCTTGTATTGTTCTTTGGCACGTGGATGCCGTTGCTGGTGACGAGTTTATCTCGAAATACAACCGTTTCTTCTTCAAATCCTAGAGTAGTGAATATTGGAGTTATGTTCACTGTGAACTCGGTTATTGGAAGGTCTGCACAGCCGGCAATTTGGGCTGCAGTTGATGATGTCAATGCTGATAACAGCATTCTTCCTGGAGTGAAACTAAACATTATTTTACATGACACAAACTGCAGTGGATTTCTTGGAACGGTGGAAGCCTTGCAATTGATGGAAGATGAAGTGGCCATTGCCATTGGACCACAGTCTTCAGGGATAGCTCATGTCATTTCTCATATTGTTAACGAACTCCATGTACCACTTCTGTCATTTGGAGCTACGGATCCCACTCTGTCTGCACTACAATACCCATATTTTGTTCGTACTACGCAGAATGACTATTACCAGATGAATGCAATTGCTGATCTAGTAGATTATTATGGATGGAGAGAGGTCATTGCCATCTTTGTAGATGATGATAATGGCAGAAACGGGATATCAGCATTGAGCGATTCCCTGGCAAAGAAGCGAGCCAAGATTGCTTATAAAGCCGCCTTCTCTCCTGGATCCTCTGAAAGCACAATCAGAAACTTGTTGGTTGAGATAAACCTCATGGAATCTCGGGTGTATGTTGTACATGTTAATCCTGACACTGGTTTGTCTGTATTTTCAATTGCCAAGGGTCTTGGGATGATGGGAAATGGATATGTATGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCTTTACGAACAAGTAGTCCTGACATAATGAATCATATACAAGGGGTTGTTGCTCTTCGTCACCACACCCCCGATAGTAATCTAAAGAAAAGCTTTGCCTCCAAGTGGAAGAAACTTAAATACAAGAGCGGAGCAAGCTTCAACTCTTATGCACTCTATGCATACGATTCCGTTTGGTTAGCTGCCCGCGCTCTCGATGTATTTTTTAAAGAAGGTGGCAATATATCCTTCTCTAAAGACTCGAAATTATCCGACAACAATGGAAGCATGCTGCACTTGTCATCACTTCGAGTTTTGAATGGTGGCCAACAACTTCTCCAGACTATTCTGAATATGAACTTCACTGGTTTAAGTGGGCAGATCCAATTTGATAAAGAGAAAAATTTAGTTCGTCCAGCCTATGACATTCTGAACATTGGTGGAACTGGCTCCCGCAGAATTGGTTACTGGTCAAATTACTCTGGCCTATCAACTACTGCACCAGAGATCTTATATTCAGAACCTCTTAATGCTTCTACAAGTAATCATCTCTACAGCGTAATATGGCCAGGTGAAGTAACAGCTATTCCTCGTGGATGGGTGTTTCCCCATAACGGAAATCCGCTGCAAATTGCAGTTCCTTACCGTGTGAGTTACAAAGCCTTTGTTTCTAAAGACAAGAATCCTCCAGGAGTTAAAGGATTTTGTATAGATGTTTTTGAAGCTGCCATAAACTTGTTGCCTTATCCAGTTCCACACAATTATATATTATATGGAAACGGCAAGGACACTCCCGTGTACAATGATCTTGTATATGGTGTTGCTCAAAATAAATATGATGCAGCTGTCGGTGATATTACAATTGTGACAAATAGAACAAAGATTGTGGACTTCACACAACCATTTATGGAGTCAGGACTCGTCGTAGTTACTGTTGTCAAAGAGGAGAAGTCCAGTCCATGGGCATTTCTCAGGCCATTTACTATTCAAATGTGGGGTGTCACTGCTGCCTTCTTTCTTCTTGTGGGAGCTGTTGTCTGGATTCTCGAGCACCGGACTAATGAAGAGTTCCGTGGTCCACCAAGACAACAACTGATAACAATATTTTGGTTTAGTTTCTCGACAATGTTTTTTTCACATAAGGAAAATACCGTGAGCACCCTGGGACGGTTGGTGCTGATTATATGGCTCTTTATTGTGTTAATTATCAATTCGAGCTACACAGCTAGTTTGACGTCAATCTTAACGGTGCAGCAGCTAACATCGAAGATTGAAGGGATCGATAGTTTAATCTCTAGCAGCGAACAGATTGGAGTTCAAGAAGGGTCTTTCGCATTGAATTATCTGGTTGATGAACTCAATATAGCAGAATCTAGGATCCTTAAATTGAAAAATCAGGAGGAATATGCTGCTGCTCTTCGGAATGGACCAGCAAATGGTGGGGTAGCTGCCATCGTAGACGAGCTTCCTTACGTTGAGCTTTTCTTATCCAACACCAATTGCATATTCAGGACTGTGGGGCAGGAATTCACAAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTTGCACTTGATTTATCCACAGCTATTCTTCAACTCTCAGAGAATGGTGACCTCCAAAAGATCCATGACAAATGGCTCGCACGTACCGAGTGTTCGATGCAACTCAACCAAGTTGACGTAAACCAACTGTCACTGAGGAGCTTTTGGGGCTTGTTCCTGATCTGTGGTGTTGCTTGCTTCATTTCTCTTCTTATATTCTTCTGTAGAGTCCTACTTCAATATCGAAGATTTACACCGGAAACTGAGCCTGAAGCTGACGAGATTGAACCTGCCAGGACTAGACGCCTTAGCCATGCAAAGAGCTTTGCACGTTTTGTAGATTTTAAAGAAGCAGATATTAGATCAAACCTTAAAAGAAAGAGCAGTGATACCAAACAAGCTAGCCAAAGCTCAGATGGCCATGCCGATTCACCATCTTAA 2811 42.26 MEFFWIRRRFRWVRTGLLLVLFFGTWMPLLVTSLSRNTTVSSSNPRVVNIGVMFTVNSVIGRSAQPAIWAAVDDVNADNSILPGVKLNIILHDTNCSGFLGTVEALQLMEDEVAIAIGPQSSGIAHVISHIVNELHVPLLSFGATDPTLSALQYPYFVRTTQNDYYQMNAIADLVDYYGWREVIAIFVDDDNGRNGISALSDSLAKKRAKIAYKAAFSPGSSESTIRNLLVEINLMESRVYVVHVNPDTGLSVFSIAKGLGMMGNGYVWIATDWLPSFLDSLRTSSPDIMNHIQGVVALRHHTPDSNLKKSFASKWKKLKYKSGASFNSYALYAYDSVWLAARALDVFFKEGGNISFSKDSKLSDNNGSMLHLSSLRVLNGGQQLLQTILNMNFTGLSGQIQFDKEKNLVRPAYDILNIGGTGSRRIGYWSNYSGLSTTAPEILYSEPLNASTSNHLYSVIWPGEVTAIPRGWVFPHNGNPLQIAVPYRVSYKAFVSKDKNPPGVKGFCIDVFEAAINLLPYPVPHNYILYGNGKDTPVYNDLVYGVAQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKEEKSSPWAFLRPFTIQMWGVTAAFFLLVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFIVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSSEQIGVQEGSFALNYLVDELNIAESRILKLKNQEEYAAALRNGPANGGVAAIVDELPYVELFLSNTNCIFRTVGQEFTKSGWGFAFQRDSPLALDLSTAILQLSENGDLQKIHDKWLARTECSMQLNQVDVNQLSLRSFWGLFLICGVACFISLLIFFCRVLLQYRRFTPETEPEADEIEPARTRRLSHAKSFARFVDFKEADIRSNLKRKSSDTKQASQSSDGHADSPS 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51087788 51091888 + evm.model.ptg000010l.762 HCH2g0742 539967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0742 936 Coils Coil 719 739 - -
HCH2g0742 936 PIRSF IGluLR_plant 13 935 IPR017103 -
HCH2g0742 936 Gene3D - 163 436 - -
HCH2g0742 936 Gene3D - 772 830 - -
HCH2g0742 936 MobiDBLite consensus disorder prediction 914 936 - -
HCH2g0742 936 FunFam Glutamate receptor 593 723 - -
HCH2g0742 936 Pfam Ligand-gated ion channel 602 856 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH2g0742 936 Gene3D - 67 411 - -
HCH2g0742 936 Gene3D - 592 733 - -
HCH2g0742 936 SMART GluR_14 483 825 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH2g0742 936 Pfam Receptor family ligand binding region 65 421 IPR001828 -
HCH2g0742 936 CDD GluR_Plant 480 823 - -
HCH2g0742 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 121 149 - -
HCH2g0742 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 61 77 - -
HCH2g0742 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 334 346 - -
HCH2g0742 936 MobiDBLite consensus disorder prediction 919 936 - -
HCH2g0742 936 FunFam Glutamate receptor 163 325 - -
HCH2g0742 936 SUPERFAMILY Periplasmic binding protein-like II 457 823 - -
HCH2g0742 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 912 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
HCH2g0742 936 FunFam Glutamate receptor 477 593 - -
HCH2g0742 936 CDD PBP1_GABAb_receptor_plant 49 440 IPR044440 -
HCH2g0742 936 FunFam Glutamate receptor 719 827 - -
HCH2g0742 936 Pfam Ligated ion channel L-glutamate- and glycine-binding site 487 584 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
HCH2g0742 936 Gene3D - 477 591 - -
HCH2g0742 936 SUPERFAMILY Periplasmic binding protein-like I 42 474 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0718 HCH-Chr14:35570764 HCH2g0742 HCH-Chr2:51087788 1.20E-292 dispersed
HCH2g0742 HCH-Chr2:51087788 HCH7g0393 HCH-Chr7:2827069 1.30E-262 dispersed
HCH2g0741 HCH-Chr2:51074149 HCH2g0742 HCH-Chr2:51087788 1.70E-246 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0742 K05387 - csv:101215485 1505.35