Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0744 ATGCCAACCGGAATTATAACACCGGCGAGAAACATGCCGGCAATGATTGGAAGGAACGGGAATGTTGGTGGGTTTGGATCATCTTCTGGATTTGCACTTTCCCAGCCAAACATGATGGAAGGTCAGCTTCTCCCATTACCATTAGACATCCCTCAAAACACTTCTGAAAGTGATCTCGCTCGCATCCGAGATGACGATTTCGATACCGCTACTAAATCCGGTAGCGAAAACCACGACCTTGCCTCCGGCGACGACCAAGATCCTCGTCCTAACAAGAAGAAACGTTACCACCGCCATACCCAACATCAGATCCAAGAAATGGAAGCTTTCTTCAAAGAGTGTCCTCATCCAGATGACAAACAAAGGAAGGAACTAAGCAGAGAGTTAGGGTTAGAGCCCTTACAAGTCAAATTTTGGTTCCAAAATAAACGCACTCAAATGAAGAATCAACATGAGCGCCATGAAAATACAAATCTTCGAACAGAAAACGAGAAGCTTAGGGCTGATAATATGAGATACAGAGAAGCTCTTAGCAATGCTTCATGTCCCAATTGCGGTGGCCCAACGGCCATTGGAGAGATGTCTTTTGATGAACATCATCTTAGACTTGAAAATGCTCGTCTTCGTGAAGAGATCGATCGAATTTCAGCAATAGCTGCAAAATATGTGGGGAAGCCAGTGGTAAACTACCCTCTACTTTCTCCCCCTGTGCCTTCTCGTCCATTAGAGCTTGGAATGGGTAACTTTGGAGGACAGCCAGGCCTTGGAGGAGACATGTATGGGACTGCTGGAGACCTAATAAGATCAATCAGTGCCCCAACTGAGGCAGATAAACCTATGATCATAGAGCTAGCAGTTGCAGCCATGGAAGAGCTTATTAGAATGGCTCAAATGGGAGAACCCTTATGGATGACAAGCCTTGATGGAACCACCAATGTTCTTAATGAAGATGAGTATGTTAGAACATTTTCTAGAGGGATTGGTCCGAAGCCATCTGGATATAAATCTGAAGCTTCTCGTGAATCTGCTGTTGTTATCATGAACCACATTAACCTTGTTGAGATTCTCATGGATGTGAATCAATGGTCGACAATGTTTTCGGGGATCGTCTCGAGAGCTATGACACTGGAAGTTTTATCAACTGGAGTGGCAGGAAATTACAATGGAGCATTACAAGTGATGACAGCAGAATTTCAAGTTCCATCGCCACTTGTTCCAACTCGCGAGAGCTATTATGTGAGGTACTGCAAACAACATGCTGATGGAACCTGGGCTGTTGTGGATGTTTCCTTGGACGATCTTCGACCCACTCCAGGACTCAGATGCAGAAGAAGACCTTCTGGTTGTTTAATTCAAGAAATGAAAAATGGTTATTCACAGGTTACATGGGTAGAACATGTAGAGGTGGATGAAAGAGGAGTTCACAATCTTTACAAGCAACTAGTGAGCTCTGGTCAAGCATTTGGAGCCAAACGCTGGGTTACTACTTTAGATCGCCAATGCGAACGACTCGCCAGTGCCATGGCCACTAACATACCAACCGGTGATATTGGAGTGCTAACAAATCAAGAAGGGAGAAAGAGCATGTTGAAACTAGCTGAGAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCCACAACCCACACATGGACTACTCTTTCGGGTACGGGCGCAGACGACGTTCGGGTCATGACCCGAAAGAGCATTGATGATCCAGGAAGACCCCCTGGTATTGTTCTTAGTGCTGCAACTTCATTCTGGCTTCCTGTTTCTCCCACGAGAATTTTCGATTTCCTCCGTGATGAAAACTCTCGCAGTGAGTGGGACATTCTTTCTAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCCAATGGCCGTGACACTGGTAATTGCGTTTCTTTACTCCGGGTTAATAGCGCAAATTCAAGCCAAAGCAACATGCTAATTCTACAAGAAAGCTGCACCGATCCCACAGCCTCTTTCGTAATCTACGCTCCGGTCGATATCGTAGCAATGAACGTAGTTCTCAACGGCGGAGACCCGGATTACGTAGCACTTCTTCCCTCAGGTTTCGCTATTCTCCCAGACGGTGGCAGCGGCGGGGAGGCTGTTTCCGGCGGTTCTCTACTGACGGTTGCTTTTCAGATACTCGTCGATTCCGTTCCGACGGCTAAACTCTCACTGGGATCAGTAGCAACGGTGAACAATCTCATTGCATGCACTGTTGAGAGGATTAAAGCTTCATTATCATGCGAGAATGCATGA 2274 46.04 MPTGIITPARNMPAMIGRNGNVGGFGSSSGFALSQPNMMEGQLLPLPLDIPQNTSESDLARIRDDDFDTATKSGSENHDLASGDDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTNLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGGQPGLGGDMYGTAGDLIRSISAPTEADKPMIIELAVAAMEELIRMAQMGEPLWMTSLDGTTNVLNEDEYVRTFSRGIGPKPSGYKSEASRESAVVIMNHINLVEILMDVNQWSTMFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYYVRYCKQHADGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMKNGYSQVTWVEHVEVDERGVHNLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDIGVLTNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPVSPTRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGGSGGEAVSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENA 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51109525 51114512 - evm.model.ptg000010l.760 HCH2g0744 539969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0744 757 SMART HOX_1 91 154 IPR001356 GO:0003677(InterPro)
HCH2g0744 757 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289(InterPro)
HCH2g0744 757 Coils Coil 144 176 - -
HCH2g0744 757 FunFam Homeobox-leucine zipper protein GLABRA 2 283 502 - -
HCH2g0744 757 CDD START_ArGLABRA2_like 278 502 - -
HCH2g0744 757 MobiDBLite consensus disorder prediction 68 102 - -
HCH2g0744 757 Pfam START domain 284 503 IPR002913 GO:0008289(InterPro)
HCH2g0744 757 SUPERFAMILY Homeodomain-like 81 150 IPR009057 -
HCH2g0744 757 Pfam Homeodomain 93 149 IPR001356 GO:0003677(InterPro)
HCH2g0744 757 Gene3D - 313 502 IPR023393 -
HCH2g0744 757 CDD homeodomain 93 151 IPR001356 GO:0003677(InterPro)
HCH2g0744 757 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677(InterPro)
HCH2g0744 757 SMART START_1 283 503 IPR002913 GO:0008289(InterPro)
HCH2g0744 757 FunFam Homeobox-leucine zipper protein HDG1 80 166 - -
HCH2g0744 757 Gene3D - 79 167 - -
HCH2g0744 757 MobiDBLite consensus disorder prediction 68 91 - -
HCH2g0744 757 SUPERFAMILY Bet v1-like 274 505 - -
HCH2g0744 757 SUPERFAMILY Bet v1-like 522 749 - -
HCH2g0744 757 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH2g0744 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 76 755 IPR042160 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1161 HCH-Chr13:38075598 HCH2g0744 HCH-Chr2:51109525 5.50E-225 dispersed
HCH2g0744 HCH-Chr2:51109525 HCH7g1594 HCH-Chr7:48243759 7.30E-203 dispersed
HCH14g0831 HCH-Chr14:36215430 HCH2g0744 HCH-Chr2:51109525 2.00E-269 wgd
HCH2g0744 HCH-Chr2:51109525 HCH3g0555 HCH-Chr3:3697787 2.00E-277 wgd
HCH2g0744 HCH-Chr2:51109525 HCH7g0229 HCH-Chr7:1529625 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33184 PF01852 START 7.70E-60 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0744 K09338 - csv:101214763 1362.05