Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0746 ATGAACGACTTGCTTACGGACTCGTTTGTTAGCGATGCTAAAGATCGGCCTTCGAGAGGGATCGATCTCGAGAAGGGAACACGAGTTCATCAAAGCATTGACATGGGAATGGAAGCTTTCAATAAGCAGATACAAGAGGTTGAGATACAAGTGGATAAGCTATCTGGGCTTCTTGTTAAATTGAAGGCTGCGAATGAGGAATCAAAGGCTGTAACAAAAGCATCAGAGATGAAAGTCGTCAAGAAGCGGATGGAGAAGGATATTGATGAAGTCGGGAAAATTGCTCGTAATGTCAAAGGGAAACTGGAAGCTATAAATAAGGATAACTTAACCAATAGGCAGAAGCCGGGATGCGAGAAGGGGACGGCCATCGACAGGGCAAGAATGAACATGACAAATGCCTTGACAAAAAAGTTCAAGGAACTGATGATAGAGTTTCAGATGCTTCGTCAAAGAATTCAAGACGAGTATCGAGAAGTCGTAGAAAGACGGGTCATTACAGTTACTGGTACCAAACCAGATGAGAAGATGATTGATCACCTCATAGAAACTGGAAACAGTGAGCAAATATTCCAGAATGCCTTTCAACATATGGGGCGAGGACAGGTCATCAGTACCGTGGAAGAAATTCAAGAACGACACGACGCAGTTAAGGAAATCGAGAGAAGGCTCTCCGAATTACATCAGATCTACATTGACATGGCAGTTCTAGTGGAGGCACAAGGGGAAATTTTGGATAACATTGAAAATCAGGTGACCAATGCAGTGGATCATGTTCGATTGGGGACAGATGCACTCAATACTGCAAAGAGCTTACAGAAGAAAAAAAGAAAATGTATGATGATTTCCATCTTACTGCTTCTGGTTATAGCAATCATAATCGTCCTCTCGGTTTTGAAGCCTTGGAAGAAGTAG 915 42.62 MNDLLTDSFVSDAKDRPSRGIDLEKGTRVHQSIDMGMEAFNKQIQEVEIQVDKLSGLLVKLKAANEESKAVTKASEMKVVKKRMEKDIDEVGKIARNVKGKLEAINKDNLTNRQKPGCEKGTAIDRARMNMTNALTKKFKELMIEFQMLRQRIQDEYREVVERRVITVTGTKPDEKMIDHLIETGNSEQIFQNAFQHMGRGQVISTVEEIQERHDAVKEIERRLSELHQIYIDMAVLVEAQGEILDNIENQVTNAVDHVRLGTDALNTAKSLQKKKRKCMMISILLLLVIAIIIVLSVLKPWKK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51142348 51145016 + evm.model.ptg000010l.758 HCH2g0746 539971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0746 304 CDD SynN 37 194 IPR006011 GO:0016020(InterPro)
HCH2g0746 304 Gene3D - 197 300 - -
HCH2g0746 304 MobiDBLite consensus disorder prediction 1 21 - -
HCH2g0746 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
HCH2g0746 304 Gene3D - 37 165 - -
HCH2g0746 304 SMART tSNARE_6 202 269 IPR000727 -
HCH2g0746 304 Coils Coil 37 64 - -
HCH2g0746 304 Pfam SNARE domain 243 295 IPR000727 -
HCH2g0746 304 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH2g0746 304 SMART SynN_4 32 158 IPR006011 GO:0016020(InterPro)
HCH2g0746 304 PANTHER SYNTAXIN 39 289 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH2g0746 304 Pfam Syntaxin 40 242 IPR006011 GO:0016020(InterPro)
HCH2g0746 304 CDD SNARE_syntaxin1-like 206 268 - -
HCH2g0746 304 FunFam Syntaxin 132 200 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0746 HCH-Chr2:51142348 HCH9g1403 HCH-Chr9:46347448 1.70E-86 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0746 K08486 - csv:101214355 493.426