Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0749 ATGAAAATGGGGTGGATGACTTGTTTGGCCATTGTAATTGGTCTTCTAGGATTGACAGGCTTAGCTCAAGCTCAGTTGCAGCTTGGTTTCTATGCCAAAAGCTGCCCAAAGGCTGAGAAGATTGTGCAAGATTTTGTTCACCAGCATATCCACAATGCCCCTTCATTGGCAGCAACTTTCATTAGAATGCACTTCCATGATTGCTTCGTCCGGGGTTGTGATGGATCTGTGCTGATAAATTCCACATCGAACAACGAAGCCGAAAAGGATGCGATACCGAACCAAACACTCAGAGGCTTCGACTTCATCGACAGAGTGAAAAGCTTACTAGAAGCCGAATGCCCCGAAGTCGTCTCTTGCGCCGATGTTCTTTCGTTAGTCGCAAGAGATACCATTGCAGCCACAGGAGGTCCTTTCTGGCAAGTCCCAACTGGCAGAAGGGATGGAGTGATCTCAATATCATCAGAAGCCTTATCTGACATTCCTCCTCCATTTGGAAACTTATCAACTCTCCTAACACTTTTCTCAAACCAAGGCTTGGATCTGAAAGACTTGGTCTTGTTATCTGGAGCTCACACAATCGGTATAGCACACTGCTCATCATTCCGAAACCGACTATACAACTTCACCGGAGTCGGCGACCAAGACCCGGCTCTGGACAGCGAGTATGCAGATAATCTGAGGGCCAACAAATGCAAAACTCCAACTGCCAACAGTAAAGTAGAAATGGACCCAGGAAGCCGCAACACTTTCGATTTAAGCTACTACTCTCTTCTTCTAAAAAGAAGAGGTCTTTTTGAATCTGATTCAGCTCTCACCACAAGCACAGCTACACTATCACTTGTTCAGAAAATTCTTCAAGGACCCATTGAAGAATTCTTTGCTGAATTTGCAGCGTCCATGGAAAAGATGGGTAGAATCAAAGTTAAAACAGGTACAGAGGGTGAAATCAGAAGGCAATGTGCAGTGGTAAACAGTTGA 981 45.16 MKMGWMTCLAIVIGLLGLTGLAQAQLQLGFYAKSCPKAEKIVQDFVHQHIHNAPSLAATFIRMHFHDCFVRGCDGSVLINSTSNNEAEKDAIPNQTLRGFDFIDRVKSLLEAECPEVVSCADVLSLVARDTIAATGGPFWQVPTGRRDGVISISSEALSDIPPPFGNLSTLLTLFSNQGLDLKDLVLLSGAHTIGIAHCSSFRNRLYNFTGVGDQDPALDSEYADNLRANKCKTPTANSKVEMDPGSRNTFDLSYYSLLLKRRGLFESDSALTTSTATLSLVQKILQGPIEEFFAEFAASMEKMGRIKVKTGTEGEIRRQCAVVNS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51161086 51162531 + evm.model.ptg000010l.755 HCH2g0749 539974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0749 326 Gene3D Peroxidase, domain 2 162 304 - -
HCH2g0749 326 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
HCH2g0749 326 PANTHER PEROXIDASE 25-RELATED 21 321 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g0749 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
HCH2g0749 326 Gene3D - 29 325 - -
HCH2g0749 326 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 FunFam Peroxidase 162 304 - -
HCH2g0749 326 Pfam Peroxidase 42 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0749 326 FunFam Peroxidase 29 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0749 HCH-Chr2:51161086 HCH4g1870 HCH-Chr4:49558800 8.30E-71 dispersed
HCH10g0061 HCH-Chr10:491422 HCH2g0749 HCH-Chr2:51161086 1.70E-47 transposed
HCH4g1904 HCH-Chr4:52460140 HCH2g0749 HCH-Chr2:51161086 1.70E-60 transposed
HCH6g1653 HCH-Chr6:49475401 HCH2g0749 HCH-Chr2:51161086 7.60E-57 transposed
HCH2g0749 HCH-Chr2:51161086 HCH7g0225 HCH-Chr7:1503973 2.10E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0749 K00430 - csv:101213629 532.717