Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0758 | ATGGAATATTCTGTAGGGAATTCGAATTGGCTCTTTGACTACAATATAATGGATGATCTCGCCATCGCCGCCGGTGACTTCTCCCCGCCGTCCATCAGTTTCTGTTTGTCCCATCCTTCCGTCAACTTTTCATCAAAAGATTGTGTAGAGGTAGACTGCTCGTATGGAGATCGGGATAGCTTACAGAAAATTGGTCAAAAACGGCCAAGGGCTGAAACAAGTGCTGCATCTGGATCCAAAGCCGGCAAAGAGAAATTGAGGAGGGATAAGCTGAATGAGAGGTTCTTGGAACTGTCTTCAGTCCTCGAACCGGGAAGACCACCCAAAACAGATAAGATTGCAATCCTGAGTGATGCTATCAGAATGATGACTGATTTACAATGCGAAACCCAGAAGTTGAAAGAATCGAAGGATGATTTGAAAGTGAAAATCAAAGAATTAAAGGCTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGGACAGAGAGAGAGAAGTTGGAGCTGCAAGTTAAAGCAGTGAATGCCCGTTCTGGCTTAGGCTTCCAGGGTCCTCCCTCCACAGCATCAGCTGCATTTACAGCAGAAGGGCAGGCTGTAGGCAACAAATTGATGCCTTTTATCGGTTATCCCGGCATTGCGATGTGGCAGTTTTTGCCACCTGCATCCGTCGACATATCTCAGGATCATGTCCTCCGCCCACCGGTTGCTTAA | 717 | 46.3 | MEYSVGNSNWLFDYNIMDDLAIAAGDFSPPSISFCLSHPSVNFSSKDCVEVDCSYGDRDSLQKIGQKRPRAETSAASGSKAGKEKLRRDKLNERFLELSSVLEPGRPPKTDKIAILSDAIRMMTDLQCETQKLKESKDDLKVKIKELKAEKNELRDEKQRLRTEREKLELQVKAVNARSGLGFQGPPSTASAAFTAEGQAVGNKLMPFIGYPGIAMWQFLPPASVDISQDHVLRPPVA | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 51219664 | 51222268 | - | evm.model.ptg000010l.746 | HCH2g0758 | 539983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0758 | 238 | MobiDBLite | consensus disorder prediction | 62 | 86 | - | - | |
HCH2g0758 | 238 | CDD | bZIP | 141 | 173 | - | - | |
HCH2g0758 | 238 | Coils | Coil | 123 | 178 | - | - | |
HCH2g0758 | 238 | CDD | bHLH_AtILR3_like | 80 | 155 | - | - | |
HCH2g0758 | 238 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 125 | 179 | - | - | |
HCH2g0758 | 238 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
HCH2g0758 | 238 | Pfam | Helix-loop-helix DNA-binding domain | 82 | 127 | IPR011598 | GO:0046983(InterPro) | |
HCH2g0758 | 238 | Gene3D | - | 66 | 124 | IPR036638 | GO:0046983(InterPro) | |
HCH2g0758 | 238 | PANTHER | BHLH TRANSCRIPTION FACTOR | 8 | 238 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
HCH2g0758 | 238 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
HCH2g0758 | 238 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 83 | 151 | IPR036638 | GO:0046983(InterPro) | |
HCH2g0758 | 238 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0647 | HCH-Chr14:35147169 | HCH2g0758 | HCH-Chr2:51219664 | 1.60E-10 | dispersed | |
HCH2g0520 | HCH-Chr2:48903348 | HCH2g0758 | HCH-Chr2:51219664 | 1.80E-09 | dispersed | |
HCH2g0758 | HCH-Chr2:51219664 | HCH7g1322 | HCH-Chr7:46133348 | 1.20E-23 | dispersed | |
HCH12g1152 | HCH-Chr12:9614208 | HCH2g0758 | HCH-Chr2:51219664 | 3.20E-48 | wgd | |
HCH2g0758 | HCH-Chr2:51219664 | HCH3g0574 | HCH-Chr3:3843115 | 3.60E-39 | wgd | |
HCH2g0758 | HCH-Chr2:51219664 | HCH6g0752 | HCH-Chr6:42023031 | 1.30E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33188 | PF00010 | HLH | 2.20E-08 | No_clan | HCH | TF |
Pathway information
