Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0758 ATGGAATATTCTGTAGGGAATTCGAATTGGCTCTTTGACTACAATATAATGGATGATCTCGCCATCGCCGCCGGTGACTTCTCCCCGCCGTCCATCAGTTTCTGTTTGTCCCATCCTTCCGTCAACTTTTCATCAAAAGATTGTGTAGAGGTAGACTGCTCGTATGGAGATCGGGATAGCTTACAGAAAATTGGTCAAAAACGGCCAAGGGCTGAAACAAGTGCTGCATCTGGATCCAAAGCCGGCAAAGAGAAATTGAGGAGGGATAAGCTGAATGAGAGGTTCTTGGAACTGTCTTCAGTCCTCGAACCGGGAAGACCACCCAAAACAGATAAGATTGCAATCCTGAGTGATGCTATCAGAATGATGACTGATTTACAATGCGAAACCCAGAAGTTGAAAGAATCGAAGGATGATTTGAAAGTGAAAATCAAAGAATTAAAGGCTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGGACAGAGAGAGAGAAGTTGGAGCTGCAAGTTAAAGCAGTGAATGCCCGTTCTGGCTTAGGCTTCCAGGGTCCTCCCTCCACAGCATCAGCTGCATTTACAGCAGAAGGGCAGGCTGTAGGCAACAAATTGATGCCTTTTATCGGTTATCCCGGCATTGCGATGTGGCAGTTTTTGCCACCTGCATCCGTCGACATATCTCAGGATCATGTCCTCCGCCCACCGGTTGCTTAA 717 46.3 MEYSVGNSNWLFDYNIMDDLAIAAGDFSPPSISFCLSHPSVNFSSKDCVEVDCSYGDRDSLQKIGQKRPRAETSAASGSKAGKEKLRRDKLNERFLELSSVLEPGRPPKTDKIAILSDAIRMMTDLQCETQKLKESKDDLKVKIKELKAEKNELRDEKQRLRTEREKLELQVKAVNARSGLGFQGPPSTASAAFTAEGQAVGNKLMPFIGYPGIAMWQFLPPASVDISQDHVLRPPVA 238
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 51219664 51222268 - evm.model.ptg000010l.746 HCH2g0758 539983
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0758 238 MobiDBLite consensus disorder prediction 62 86 - -
HCH2g0758 238 CDD bZIP 141 173 - -
HCH2g0758 238 Coils Coil 123 178 - -
HCH2g0758 238 CDD bHLH_AtILR3_like 80 155 - -
HCH2g0758 238 Gene3D arf6 gtpase in complex with a specific effector, jip4 125 179 - -
HCH2g0758 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
HCH2g0758 238 Pfam Helix-loop-helix DNA-binding domain 82 127 IPR011598 GO:0046983(InterPro)
HCH2g0758 238 Gene3D - 66 124 IPR036638 GO:0046983(InterPro)
HCH2g0758 238 PANTHER BHLH TRANSCRIPTION FACTOR 8 238 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
HCH2g0758 238 FunFam Transcription factor bHLH34 66 124 - -
HCH2g0758 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 151 IPR036638 GO:0046983(InterPro)
HCH2g0758 238 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0647 HCH-Chr14:35147169 HCH2g0758 HCH-Chr2:51219664 1.60E-10 dispersed
HCH2g0520 HCH-Chr2:48903348 HCH2g0758 HCH-Chr2:51219664 1.80E-09 dispersed
HCH2g0758 HCH-Chr2:51219664 HCH7g1322 HCH-Chr7:46133348 1.20E-23 dispersed
HCH12g1152 HCH-Chr12:9614208 HCH2g0758 HCH-Chr2:51219664 3.20E-48 wgd
HCH2g0758 HCH-Chr2:51219664 HCH3g0574 HCH-Chr3:3843115 3.60E-39 wgd
HCH2g0758 HCH-Chr2:51219664 HCH6g0752 HCH-Chr6:42023031 1.30E-57 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33188 PF00010 HLH 2.20E-08 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0758 - - - 0.0