Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0763 | ATGCCTAAATTAGAAAAATTACATACTAAACGGCCTGGTTCTGTATCCGTGGCTGAGACACTTTCAAAGTGGAAAGATTACAACAACCAACTCGAATCTTGTCGCGATGAGACCAAGCTCATCCATAAAGTTCCAGCAAAGGGATCGAGGAAGGGTTGCATGAAGGGTAAGGGAGGGCCAGAAAATTTGAGATGTAATTACAGAGGTGTTAGGCAAAGGACATGGGGCAAGTGGGTTGCAGAGATTCGGGCACCGAATAAGGGAAGTCGGCTTTGGTTGGGTACGTTTCCCACTGCCATCGAAGCTGCTCTTGCATACGATGAAGCTGCAAGGGCAATGTATGGCACGCTCGCTCGCCTCAATCTTCCGAATGTCTCAATTCCAAATTTGTTAAAAGAAGAAGAATCATCACCGAAAGATTGTCCTGAAATGAAGATTCCTTCATTATCTTTAGTGACAACATCACTTAGTTTGAGTTCAGAGTCCACAACAACATCAGACCACTCTGTGGTTTGA | 516 | 44.57 | MPKLEKLHTKRPGSVSVAETLSKWKDYNNQLESCRDETKLIHKVPAKGSRKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNKGSRLWLGTFPTAIEAALAYDEAARAMYGTLARLNLPNVSIPNLLKEEESSPKDCPEMKIPSLSLVTTSLSLSSESTTTSDHSVV | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 51265489 | 51266004 | + | evm.model.ptg000010l.741 | HCH2g0763 | 539988 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0763 | 171 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 160 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
HCH2g0763 | 171 | CDD | AP2 | 65 | 125 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0763 | 171 | SUPERFAMILY | DNA-binding domain | 66 | 123 | IPR016177 | GO:0003677(InterPro) | |
HCH2g0763 | 171 | Pfam | AP2 domain | 66 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0763 | 171 | Gene3D | AP2/ERF domain | 66 | 124 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0763 | 171 | PRINTS | Ethylene responsive element binding protein signature | 67 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0763 | 171 | PRINTS | Ethylene responsive element binding protein signature | 89 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0763 | 171 | FunFam | Ethylene-responsive transcription factor 2 | 65 | 124 | - | - | |
HCH2g0763 | 171 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0763 | 171 | SMART | rav1_2 | 66 | 129 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0763 | HCH-Chr2:51265489 | HCH9g0802 | HCH-Chr9:5546165 | 3.60E-41 | dispersed | |
HCH2g0763 | HCH-Chr2:51265489 | HCH13g0567 | HCH-Chr13:4342566 | 2.00E-47 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33189 | PF00847 | AP2 | 8.60E-15 | CL0081 | HCH | TF |
Pathway information
