Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0763 ATGCCTAAATTAGAAAAATTACATACTAAACGGCCTGGTTCTGTATCCGTGGCTGAGACACTTTCAAAGTGGAAAGATTACAACAACCAACTCGAATCTTGTCGCGATGAGACCAAGCTCATCCATAAAGTTCCAGCAAAGGGATCGAGGAAGGGTTGCATGAAGGGTAAGGGAGGGCCAGAAAATTTGAGATGTAATTACAGAGGTGTTAGGCAAAGGACATGGGGCAAGTGGGTTGCAGAGATTCGGGCACCGAATAAGGGAAGTCGGCTTTGGTTGGGTACGTTTCCCACTGCCATCGAAGCTGCTCTTGCATACGATGAAGCTGCAAGGGCAATGTATGGCACGCTCGCTCGCCTCAATCTTCCGAATGTCTCAATTCCAAATTTGTTAAAAGAAGAAGAATCATCACCGAAAGATTGTCCTGAAATGAAGATTCCTTCATTATCTTTAGTGACAACATCACTTAGTTTGAGTTCAGAGTCCACAACAACATCAGACCACTCTGTGGTTTGA 516 44.57 MPKLEKLHTKRPGSVSVAETLSKWKDYNNQLESCRDETKLIHKVPAKGSRKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIRAPNKGSRLWLGTFPTAIEAALAYDEAARAMYGTLARLNLPNVSIPNLLKEEESSPKDCPEMKIPSLSLVTTSLSLSSESTTTSDHSVV 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51265489 51266004 + evm.model.ptg000010l.741 HCH2g0763 539988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0763 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 160 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
HCH2g0763 171 CDD AP2 65 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0763 171 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677(InterPro)
HCH2g0763 171 Pfam AP2 domain 66 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0763 171 Gene3D AP2/ERF domain 66 124 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0763 171 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0763 171 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0763 171 FunFam Ethylene-responsive transcription factor 2 65 124 - -
HCH2g0763 171 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0763 171 SMART rav1_2 66 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0763 HCH-Chr2:51265489 HCH9g0802 HCH-Chr9:5546165 3.60E-41 dispersed
HCH2g0763 HCH-Chr2:51265489 HCH13g0567 HCH-Chr13:4342566 2.00E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33189 PF00847 AP2 8.60E-15 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0763 - - - 0.0