Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0774 ATGGAAAATAAGTACTCTGCAAAAAAGGGATGTGCCTTTTCCATCATCCCTCATTTAGTCTTACATTCCTTAGCCATACTATTATTTTCATCCACAGGAAACAGTAGCGTTGATACATTAAGAGATATGGATGGAGATTCTCTCATTTCACCAGGAAGAAGATTCCAACTTGGATTCTTCACTCCTCAAAATGGCAGAAGATACGTCGGAATATGGTTTTACAATTCGAGACCACAAGTTGTTGTATGGGTTGCCAACAGAAACCAATCATTATCCGACAACAATGGAGTTTTCACCATGCAAGCCGGCAACCTTAAAGTACTCGAATCAGATGGAACTTCTTTATGGTCTACTGATCTCGAAGATTCTCCTAACAACACGGCAATGATGCTCATGGATTCTGGGAACTTGGTTCTTACGGAATTCAACAGAAGCAGTAATGTTCTTTGGGAAAGCTTCCGAAATCCAACTGATACGTTTCTTCCTGGCATGGCCATGAGCGACGACTTGAAGTTGACGTCTTGGAAAACAGCCACCGACCCATCACCGGGAAACTTCACGTTTCTGATGTATTTAGAAAGCCGATACGTAATCGAGAGACAAAACAAAAAATATTGGAAAAGTAAAGGAGTATGGCAAAATTACTCCATGGAAACTGAGGGTGAGATTTCTATAGTATTCAACTTACTTTCAAACGTGAGTGCTGATAACTTAGAGGTCAACAATTATACAGTACGTTTTGACAATAGACAATTGGATTACAACTATACAAGAATGGTTATGAGTTTTGAAGGAAAGATAGAGTACCTTGCGAGGAATAGAATGAGTGAAAAATGGGATCAAATCTGGTTTGAACCAAGAGAAAAATGTAGTGTTTTAACAGCTTGTGGGAGCTTTGCTAGCTGCCATAGTGGGAGCCGATACAGTTGCAGATGTTTGCCTGGTTTTGAGCCTAAGGATAAGGATAAATGGGATTCTGGTGATTTTACAGATGGATGTGAGAGAAAATCAGAGATTTGTGGTGAAGAAGATGAAACTAAAGACTTTTTGACAATAAATATGAAAGTAGAAAAGACTTCTAATATTGTCATAGTTAAGGATGATGGGGAATGTCGAAAGAGGTGTCTTGAATCTTGTGATTGTGAGGCATATTCAGAAATCACAACTGATAATAGAACACCTGGTGATTCTGTTGCGTGTGCCACATGGAACGAGGAGCTCCGACACATTTGGGAATCTACTGCTGGTGGTGGTGATGTCCATGTCCGTATCAAACATCTCGACACAGAATTTACAAAATCTGATTGTGAGGCATGTGGAAGCATCATCATCCCTTATCCTCTAAGTACACGAACCAACTGTGGCGATCCTATGTACAATAACTTCATCTGTAATTCCTCTAGTCAAAGTCAGGTCTTCTTTCTCTCAGCAAATCGTGCCTATCAAATCACGAACATCGATCCAGAAAAATATACTCTTACTATCAGAACACCCGAGTCAATCTGCAGAGAAAAAGATGGGTATATAATTGGAACGCTTCTGAATTTGACACAAGCATCATCTAGATTCAAAGTAATTAGAGGTTGTGATTATGGTTCCAACAACTCCAGCTCATACCCTTTATGGGAAGAATTATATTTCAATGAAGTTGATATTCAATGGGAGAAAGCATTGGAACCAATCTGCAATTCTTTAAACGACTGCAGCATTTGGCCAAATTCGATATGCAACTCATCCGCAGATGGTACAAAGAGGTGTTTGTGCAATCCTTCTTTTGAATGGAATGGCACCAGCTGCGGTTCTCCTGCAGTTGTAGAGGTCGCTTTGAATCAGCCACAACATCAAAGGAGGAATCTTAAAGTTAGTCTCATTGTCCCACTGACCATTGCTGTCTTGATTGTTATCTCCTGCTTGGTGTTCTACATTTATTACAAATTTAGGGATGTAGGAATTCAACAAGACAATAAAACAAGCAATTGGAAAAATCGTGAAATTCACTTGTATGACAGCGAGAAACGTGTCAAAGACTTCATAGGGTCCGGGGAGTTTGGAGAAGATGATAGGAAAGCAATAGATGTACCAGTTTTTGATTTGGAATCCATACTTGGTGCCACAGACAACTTCTCAGAAGCAAACAAAATTGGACGAGGCGGGTTCGGGGCAGTTTACAAGGGAAACTTTCCAGGAGGACTAGAAATTGCAATAAAAAGGCTGTCTAAAGCTTCTGCCCAAGGTGTGGATGAGTTTAAGAATGAGGTTATTTTGATTGCCAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGTTATTGTGTTGCTGGAGAGGAAAAAATGTTGGTTTATGAATATCTGCCCAACAAAAGTTTAGATTACTTTATATTCGATCGAACACTTTGTTTACTGGTGAATTGGGAGATGCGGTTTAATATCATCATCGGGATCGTTCGAGGACTAGTTTATCTCCATGAAGATTCAAGGTTGAGGGTTATTCATAGAGATTTGAAAACCAGCAATGTTCTCTTAGATGCAGAAATGAATCCAAAGATTTCCGACTTCGGTTTAGCAAGAATCTTTGATGGCAAACAAACTGAAGCAACCACCAACAGAGTTGTTGGAACTTATGGCTACATGTCACCAGAATATGCCTTGGACGGATCGTTCTCGGTCAAGTCAGATGTCTTTAGTTTTGGTATAGTTGTCTTAGAAATCGTCAGTGGAAGAAGGAACATGGGTTTTTACCAATCGAAAGACGGTTTACGCCTCCTTGGATATGTTTGGAAATGGTGGACAGAGAAAAAACCATTGGAGATAGCAGATCAAGTTCTTAGAGAAAGTTGCAATCCAAGTGAAGTTATAAAGTGTATAAATGTAGGTTTGCTCTGTGTACAAGAAGACCCAAATGATCGTCCCACCATGTCCAATGTAGCTTTTATGCTCAGTTTCGGCACCGATATCGCTTCTCTTCCGAATCCCAAACAACCAGCCTTTGTTGAAAATAGATTGAGTCTTTCTCCTACTGCTACTGCAACTTCTTCAGGCAATAAACAATCAGAAATAAGCAATCAAGTGAGCTTACTAGAGCCTAGATAA 3090 39.81 MENKYSAKKGCAFSIIPHLVLHSLAILLFSSTGNSSVDTLRDMDGDSLISPGRRFQLGFFTPQNGRRYVGIWFYNSRPQVVVWVANRNQSLSDNNGVFTMQAGNLKVLESDGTSLWSTDLEDSPNNTAMMLMDSGNLVLTEFNRSSNVLWESFRNPTDTFLPGMAMSDDLKLTSWKTATDPSPGNFTFLMYLESRYVIERQNKKYWKSKGVWQNYSMETEGEISIVFNLLSNVSADNLEVNNYTVRFDNRQLDYNYTRMVMSFEGKIEYLARNRMSEKWDQIWFEPREKCSVLTACGSFASCHSGSRYSCRCLPGFEPKDKDKWDSGDFTDGCERKSEICGEEDETKDFLTINMKVEKTSNIVIVKDDGECRKRCLESCDCEAYSEITTDNRTPGDSVACATWNEELRHIWESTAGGGDVHVRIKHLDTEFTKSDCEACGSIIIPYPLSTRTNCGDPMYNNFICNSSSQSQVFFLSANRAYQITNIDPEKYTLTIRTPESICREKDGYIIGTLLNLTQASSRFKVIRGCDYGSNNSSSYPLWEELYFNEVDIQWEKALEPICNSLNDCSIWPNSICNSSADGTKRCLCNPSFEWNGTSCGSPAVVEVALNQPQHQRRNLKVSLIVPLTIAVLIVISCLVFYIYYKFRDVGIQQDNKTSNWKNREIHLYDSEKRVKDFIGSGEFGEDDRKAIDVPVFDLESILGATDNFSEANKIGRGGFGAVYKGNFPGGLEIAIKRLSKASAQGVDEFKNEVILIAKLQHRNLVRLLGYCVAGEEKMLVYEYLPNKSLDYFIFDRTLCLLVNWEMRFNIIIGIVRGLVYLHEDSRLRVIHRDLKTSNVLLDAEMNPKISDFGLARIFDGKQTEATTNRVVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNMGFYQSKDGLRLLGYVWKWWTEKKPLEIADQVLRESCNPSEVIKCINVGLLCVQEDPNDRPTMSNVAFMLSFGTDIASLPNPKQPAFVENRLSLSPTATATSSGNKQSEISNQVSLLEPR 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51395714 51399900 - evm.model.ptg000010l.730 HCH2g0774 539999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0774 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0774 1029 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 784 987 - -
HCH2g0774 1029 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 181 IPR036426 -
HCH2g0774 1029 CDD PAN_AP_plant 340 424 - -
HCH2g0774 1029 Pfam D-mannose binding lectin 81 171 IPR001480 -
HCH2g0774 1029 ProSiteProfiles PAN/Apple domain profile. 340 427 IPR003609 -
HCH2g0774 1029 Pfam PAN-like domain 346 408 IPR003609 -
HCH2g0774 1029 CDD STKc_IRAK 714 979 - -
HCH2g0774 1029 ProSiteProfiles Bulb-type lectin domain profile. 33 152 IPR001480 -
HCH2g0774 1029 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544(InterPro)
HCH2g0774 1029 Gene3D Phosphorylase Kinase; domain 1 678 783 - -
HCH2g0774 1029 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 38 994 - -
HCH2g0774 1029 Gene3D Transferase(Phosphotransferase) domain 1 784 986 - -
HCH2g0774 1029 ProSiteProfiles Protein kinase domain profile. 708 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0774 1029 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 673 783 - -
HCH2g0774 1029 ProSitePatterns Protein kinases ATP-binding region signature. 714 736 IPR017441 GO:0005524(InterPro)
HCH2g0774 1029 Pfam Protein tyrosine and serine/threonine kinase 711 976 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0774 1029 MobiDBLite consensus disorder prediction 1006 1029 - -
HCH2g0774 1029 MobiDBLite consensus disorder prediction 1006 1024 - -
HCH2g0774 1029 SMART blect_4 39 156 IPR001480 -
HCH2g0774 1029 Gene3D - 38 153 IPR036426 -
HCH2g0774 1029 SMART serkin_6 708 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0774 1029 CDD B_lectin 44 156 IPR001480 -
HCH2g0774 1029 SUPERFAMILY Protein kinase-like (PK-like) 691 980 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0774 HCH-Chr2:51395714 HCH3g0596 HCH-Chr3:4100816 8.20E-149 dispersed
HCH2g0774 HCH-Chr2:51395714 HCH2g0775 HCH-Chr2:51402848 0.00E+00 tandem
HCH12g1129 HCH-Chr12:8876046 HCH2g0774 HCH-Chr2:51395714 4.50E-118 wgd
HCH14g0858 HCH-Chr14:36383985 HCH2g0774 HCH-Chr2:51395714 1.50E-111 wgd
HCH2g0774 HCH-Chr2:51395714 HCH6g0716 HCH-Chr6:40611922 2.10E-112 wgd
HCH2g0774 HCH-Chr2:51395714 HCH7g0202 HCH-Chr7:1396888 2.10E-277 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81324 PF00069 Pkinase 4.80E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0774 - - - 0.0