Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0788 ATGAGATGGTATTCTTTCTACAACAAAGCCTCTCAGGCTTTTCGTGATAATTCTACCATCTCCAAACTTCTCATTGTTTGCACTGTCAGTGGTGGAGGACTGGTAGCAGCTTCTAATGGGAAATCAATGTATCAAGCTTCTTATGCTGATGCAGTCCATGTCAGTGACTGCAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCAGGCACCAGCTTCTTGAAGAACCTCAAGAGCTCCAATTACGATGTTCATGTCATCTCTCCTCATAATTACTTTGCTTTTACCCCTTTGCTTCCTAGTGTCACTTGTGGCACTGTGGAAGCTCGCAGCATTGTTGAACCAATTCGTACTATCACAAAGAAGAAAGGTTTGCATATTGAATTCAAGGAAGCTGAGTGCTACAAGATTGATGCAGATCAGAAGAAGGTCCATTGTCGATCAAGTCAAGACAGAAATGTGGGCGGGATGGAAGAATTTTCTATGGACTATGACTATCTGATAATTGCCATGGGAGCTAAATCTAACACTTTCAACACTCCTGGTGTTGAGGAATATGCTCACTTCTTGAAGGGAGTAGAAGATGCTCAGAGGATTCGTCAGTCGGTGATCGATTGTTTTGAGAGAGCTAGCCTTCCAAACCTAAGTGAAGAAGAGAAGAAGAGAATTCTTCATTTTGTTATAGTTGGAGGTGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGACTTTGTAGTTGAGGATTTGTCAAGGTTATATCCTTCACTGAAAGACTATGTCAAAATAACCCTCCTTGAGGCAGGGGATCACATTTTGAATATGTTTGACAAGAGAATTACTGCCTTTGCTGAAGAAAAGTTTCAAAGAGATGGAATTGAGTTGAAAACTGGTTCTATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACTAAAGAAAGAGCATCTGGTGCATTTGTGTCCATTCCTTATGGAATGGTCGTCTGGTCGACTGGCATTGGTCCTCGTCCTCAAGTTGTTGATTTTATGAAGCAGATTGGTCAGACTAACAGACGAGCTTTGGCGACGGATGAGTGGCTGAGGGTTGAAGGATGTGACAGTGTCTATGCTCTTGGTGATTGTGCAACCATAAATCAAAGAAGAGTCATGGAAGATATTGCAGTAATATTCAATAAGGCAGACAAGGACAAGTCAGGAACTCTAAACCTGCAAGAGTTTCAGGAAGTAGTAGATGATATTTGTGAGAGGTACCCTCAAATAGAGCTCTATTTGAAGAAGCGGAAGATGAAGAATTTTGCAGCTTTGTTGAAGTCACAATCAGATGCGAAGAAACAGTCAACCGAGCTGGATATCGAAACGTTTAAATCCGTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCCGCTACAGCTCAAGTAGCTGCTCAACAAGGTGAATATCTTGCAAGCTGTTTCAACAAATTGGAGCTCTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTAGAGGAACAGGACGCCATCGGTTTCATCCCTTCATGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCCGCTCAGCTACCTGGAGATTGGATCTCAATTGGCCACAGTACTCAATGGCTTTGGTATTCTGTGTATGCAAGCAAGCTAGTCAGCTGGCGCACAAGGGTCCTTGTGGTATCTGATTGGGGTAGGAGATTCATATTTGGCAGGGACTCCAGCAGAATCTGA 1752 43.15 MRWYSFYNKASQAFRDNSTISKLLIVCTVSGGGLVAASNGKSMYQASYADAVHVSDCKKKKVVVLGTGWAGTSFLKNLKSSNYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRTITKKKGLHIEFKEAECYKIDADQKKVHCRSSQDRNVGGMEEFSMDYDYLIIAMGAKSNTFNTPGVEEYAHFLKGVEDAQRIRQSVIDCFERASLPNLSEEEKKRILHFVIVGGGPTGVEFAAELHDFVVEDLSRLYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFQRDGIELKTGSMVVKVTDKEISTKERASGAFVSIPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDSVYALGDCATINQRRVMEDIAVIFNKADKDKSGTLNLQEFQEVVDDICERYPQIELYLKKRKMKNFAALLKSQSDAKKQSTELDIETFKSVLSEVDSQMKNLPATAQVAAQQGEYLASCFNKLELCEKYPEGPLRFRGTGRHRFHPFMYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRVLVVSDWGRRFIFGRDSSRI 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51524667 51528414 - evm.model.ptg000010l.716 HCH2g0788 540013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0788 583 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
HCH2g0788 583 SUPERFAMILY FAD/NAD(P)-binding domain 220 379 IPR036188 -
HCH2g0788 583 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 582 - -
HCH2g0788 583 PANTHER NADH DEHYDROGENASE 45 583 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
HCH2g0788 583 Gene3D - 49 438 - -
HCH2g0788 583 Gene3D - 458 573 - -
HCH2g0788 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
HCH2g0788 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
HCH2g0788 583 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
HCH2g0788 583 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 381 IPR023753 GO:0016491(InterPro)
HCH2g0788 583 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
HCH2g0788 583 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
HCH2g0788 583 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
HCH2g0788 583 SUPERFAMILY EF-hand 343 468 IPR011992 -
HCH2g0788 583 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
HCH2g0788 583 Pfam NDH2 C-terminal domain 518 579 IPR054585 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0788 HCH-Chr2:51524667 HCH2g1017 HCH-Chr2:53394254 3.10E-76 dispersed
HCH13g1070 HCH-Chr13:34277749 HCH2g0788 HCH-Chr2:51524667 5.90E-13 transposed
HCH14g0883 HCH-Chr14:36556643 HCH2g0788 HCH-Chr2:51524667 7.90E-74 wgd
HCH2g0788 HCH-Chr2:51524667 HCH3g0606 HCH-Chr3:4172038 5.70E-256 wgd
HCH2g0788 HCH-Chr2:51524667 HCH7g0181 HCH-Chr7:1188157 3.70E-223 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0788 K03885 - csv:101209855 1036.94