Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0802 ATGGGGAGTTGTTTCTCTACTTGTAGTCAGAGTAGCTGCGGTGGCGGAAGCAATAGAGAGACGGTTTCTGGGTCCTGTTTGGGAATTGGAATTCATGGCCAGATAAAAAGAAAGAAAACATACTCAGATCATATCTTTTCTCTGCAGCGTTTGAATTCCTCAGCTAATAGAATTGTCCATAATGGAAAGACTCCAAATTCTTGCATTTTCACTCAACAAGGTCGCAAGGGTGTAAACCAGGATGCCATGGTTGTCTGGGAAGATTTCCTTTCAGAAGATGCAATTTTTTGTGGAATATTTGATGGTCACGGCCCCCATGGTCATATAGTTGCACGAAAAGTTAGAGATGTCCTGCCTAGAAAGCTATTATCTTCCTGGCAATCATATCAGTTGAAGAGTAATAGATCGGATAGAACTTGTTTCCAATGGAACCTGAAGAAATCATCTCATGCTCGAGATTTGGAGATGGATGGTTCAGAGGAGAGTAAATCAAGTTCTATATGGAGAATGGCTTTCCTCAAATCATACAAAGCCATGGATAAGGAGCTCAAATCCAATCCTAAATTGGACTGTTTCTGTAGTGGTAGTACTGCAGTGACTCTAGTGAAACAGGGTTCAAATCTATTCATGGGAAGCGTCGGGGATTCGCGAGCAATTCTTGGATCCAAAGATAGTAGTGATTCCCTAGTAGCAACACAATTGACTGTAGATCTGAAGCCCGACTTGCCGAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTATTTGCATTGCAAGATGAGCCAGAAGTGTCAAGAGTGTGGCTGCCATTTGACAATGCGCCTGGATTAGCCATGGCGCGAGCATTTGGTGATTTCTGTTTGAAGGACTATGGAGTTATCTCCATTCCTGAGTTCTCGCACCGCTCGCTTACATATAGTGATCTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGATGTATTAAGCAACCAAGAGGTTGTTGAGATAGTATATTCCGCCTCAACTCGGTCATCAGCGGCCCGAATGGTGGTAGACGCGGCTGCTCGTGAGTGGAAGCTCAAGTACCCAACTTCAAAAATGGATGACTGTGCAGTAGTTTGCCTATACTTGGATGGAACAATGGATTCGGAATCAGAAAACGAAGAACTAACTTCATCTGCAACTCTTAAAACTGATCATATTGGTTATGGTGGTGATTCAGATGAAGAGCAGAAGTCTGAGCCAAGATTGAATAGGAATTACACAGTCAGATCATCCGAAGAAAACGACCAATTTGGAGGATTATCTTCCAACACTGCAGGGAATGGAGAAACAATGACTGCTGAAGACGAGAATTGGTTGGGATTGGAGGGTGTAACAAGAGTGAACTCTCTCGTTCAACTCCCTAGATTTTCTTAA 1404 43.09 MGSCFSTCSQSSCGGGSNRETVSGSCLGIGIHGQIKRKKTYSDHIFSLQRLNSSANRIVHNGKTPNSCIFTQQGRKGVNQDAMVVWEDFLSEDAIFCGIFDGHGPHGHIVARKVRDVLPRKLLSSWQSYQLKSNRSDRTCFQWNLKKSSHARDLEMDGSEESKSSSIWRMAFLKSYKAMDKELKSNPKLDCFCSGSTAVTLVKQGSNLFMGSVGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVSRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRSLTYSDLFVVLASDGVWDVLSNQEVVEIVYSASTRSSAARMVVDAAAREWKLKYPTSKMDDCAVVCLYLDGTMDSESENEELTSSATLKTDHIGYGGDSDEEQKSEPRLNRNYTVRSSEENDQFGGLSSNTAGNGETMTAEDENWLGLEGVTRVNSLVQLPRFS 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51605235 51607228 - evm.model.ptg000010l.702 HCH2g0802 540027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0802 467 Pfam Protein phosphatase 2C 159 350 IPR001932 -
HCH2g0802 467 SMART PP2C_4 50 370 IPR001932 -
HCH2g0802 467 FunFam probable protein phosphatase 2C 52 57 375 - -
HCH2g0802 467 MobiDBLite consensus disorder prediction 419 441 - -
HCH2g0802 467 MobiDBLite consensus disorder prediction 381 445 - -
HCH2g0802 467 PANTHER PROTEIN PHOSPHATASE 67 371 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH2g0802 467 MobiDBLite consensus disorder prediction 397 418 - -
HCH2g0802 467 Gene3D - 51 374 IPR036457 -
HCH2g0802 467 ProSiteProfiles PPM-type phosphatase domain profile. 66 372 IPR001932 -
HCH2g0802 467 CDD PP2Cc 72 372 IPR001932 -
HCH2g0802 467 SUPERFAMILY PP2C-like 56 374 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0802 HCH-Chr2:51605235 HCH8g0281 HCH-Chr8:15645117 5.10E-98 dispersed
HCH6g0929 HCH-Chr6:44069550 HCH2g0802 HCH-Chr2:51605235 4.10E-115 transposed
HCH2g0802 HCH-Chr2:51605235 HCH7g0165 HCH-Chr7:1106621 7.20E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0802 - - - 0.0