Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0817 ATGCAGCTCTTCCATTCCTATGGTTTTAGTCTATTTAGTGTCTGGTCTTTTGCTGTTGTTTTTTTCACGGTGAAAGCTCAGCTCCACCACCGGCTACCGGATCTCCATTGGTTCCCCGCCACCGCCACCTGGTACGGTAGCCCGGAAGGTGACGGCAGTGACGGTGGAGCTTGTGGATATGGGAATTTAGTGGATGTGAAGCCATTGAGGGCAAGAGTGGGAGCTGTGAGCCCTGTTTTGTTCAAAAATGGTGAAGGGTGTGGCGCTTGTTATAAAGTGAAGTGCTTGGACCAGAGTATTTGCTCCAGAAGAGCTGTTACTATCATTGTTACTGATGAATGCCCTGGTGGTTATTGTGCTAATGGTAACACTCATTTCGATCTCAGCGGCGCCGCTTTCGGTCATATGGCTCTCGCCGGTGAAGGCGGCCAGCTTCGGAACCGCGGTGAACTCCCCGTTATTTATCGACGGACTCCATGTAAGTATCCAGGGAAGAACATTGCTTTCCATGTGAACGAAGGCTCAACAAATTACTGGCTGTCTCTCTTGGTTGAATTTGAGGATGGAGATGGAGATATTGGCTCAATGCATATAAAAGAAGCAGGTTCAAGTGAGTGGATGGAGATGAGTCATGTATGGGGAGCAAATTGGTGCATAATTCGTGGGCCTTTAAAAGGCCCATTTTCAGTGAGATTAACAACATTAGCAACAGGAAGAACACTCTCAGCAAGAGATATAATTCCGAGGAATTGGTCTCCAAAAGCAACCTACACTTCTCGTCTCAATTTCTTCTCCTAA 798 47.24 MQLFHSYGFSLFSVWSFAVVFFTVKAQLHHRLPDLHWFPATATWYGSPEGDGSDGGACGYGNLVDVKPLRARVGAVSPVLFKNGEGCGACYKVKCLDQSICSRRAVTIIVTDECPGGYCANGNTHFDLSGAAFGHMALAGEGGQLRNRGELPVIYRRTPCKYPGKNIAFHVNEGSTNYWLSLLVEFEDGDGDIGSMHIKEAGSSEWMEMSHVWGANWCIIRGPLKGPFSVRLTTLATGRTLSARDIIPRNWSPKATYTSRLNFFS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51732707 51734229 - evm.model.ptg000010l.687 HCH2g0817 540042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0817 265 FunFam Expansin B3 23 161 - -
HCH2g0817 265 PANTHER EXPANSIN-B3 23 263 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
HCH2g0817 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 259 IPR007117 -
HCH2g0817 265 SMART dpbb_1 73 155 IPR007112 -
HCH2g0817 265 Gene3D - 161 260 IPR036749 -
HCH2g0817 265 Gene3D - 25 160 IPR036908 -
HCH2g0817 265 FunFam Beta-expansin 3 162 264 - -
HCH2g0817 265 Pfam Lytic transglycolase 75 147 IPR009009 -
HCH2g0817 265 SUPERFAMILY PHL pollen allergen 165 259 IPR036749 -
HCH2g0817 265 CDD DPBB_EXPB_N 37 160 - -
HCH2g0817 265 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
HCH2g0817 265 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
HCH2g0817 265 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
HCH2g0817 265 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
HCH2g0817 265 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
HCH2g0817 265 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
HCH2g0817 265 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH2g0817 265 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH2g0817 265 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH2g0817 265 PRINTS Major pollen allergen Lol pI signature 235 252 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH2g0817 265 PRINTS Major pollen allergen Lol pI signature 75 86 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH2g0817 265 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
HCH2g0817 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 165 IPR007112 -
HCH2g0817 265 Pfam Expansin C-terminal domain 167 248 IPR007117 -
HCH2g0817 265 SUPERFAMILY Barwin-like endoglucanases 36 164 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0817 HCH-Chr2:51732707 HCH7g1774 HCH-Chr7:49319079 5.00E-66 dispersed
HCH2g0817 HCH-Chr2:51732707 HCH6g0686 HCH-Chr6:40159949 2.20E-29 wgd
HCH2g0817 HCH-Chr2:51732707 HCH7g0158 HCH-Chr7:1059523 2.10E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0817 K20628 - csv:101202998 463.766