Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH2g0832 | ATGGGCTGCATCTGTTCCAAGGCTTCAGCAGAAGAAGACAGCAACCACGGCAACTCCAAAAGAGCATTTTCCATGAGAAAACACCTTTCGGACGTAGAAATATCTCGAGTTGATTCTTCTAAAATGAAGGAGAGAATTCGGGAAAGAGAGAGATTGAATTGTGGAGATGTAACTGTTATGTTGTTTGATAAGAAGGCCGACGATTCGCTGCGGTCATATGGCGAAGTTAATGAGCTAATAAGGAAGAAGAAAGAGATCCGTGATGTCAGTATTTTAAAACATCCATGTACAGGGGGAATTGGAAGGATTCCAAAAGCTACTGAAGCTGAGCAGGTGGCTGCTGGATGGCCAAGTTGGCTGGCTGCCGTGGCCGGTGAAGCCATCAATGGGTGGTTGCCGAAATGCGCGAAAAACTTCATCAAGTTAGATAAAATTGGCCAAGGAACTTACAGCAGTGTATATAAAGCGCGAGATGTCGTTCAAGATAAAGTCGTGGCCTTAAAAAGGGTGCGGTTCGACAATCATGATAGCGAGAGTATCAAGTTTATGGCACGGGAAATTCTTGTTTTGAGAAGGCTTGATGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACTTCACAAGCTTCTTGTAGCTTGTACCTTGTTTTTGAATACATGGAACATGATCTTACAGGACTTGCTTCCAGGCCTGGTTTAAAGTTCACAGAACCACAGGTGAAGTGTTATGTGAAGCAACTTTTGAGTGGACTTGATCATTGTCATAGTCATGGGGTTCTGCATCGAGATATAAAGGGTTCAAATCTGCTTATTGACAACAATGGCATTTTGAAGATAGCAGACTTTGGTTTGGCTGTCTTCTTTGATCCTGAGTTAACCGCTCCGATGACGAGCCGTGTCGTAACTCTTTGGTATCGGCCACCGGAACTTCTACTTGGAGCATCTAAATATGGAGCTGCAGTTGATTTATGGAGTACTGGTTGCATACTTGGAGAGTTGTATGCTGGCAAGCCTGTCTTGCCAGGAAAAACAGAGGTTGAACAACTTCATATGATATTTAAGCTTTGTGGTTCACCATCAAAGGAGTATTGGAGTAAGTTGCATTTGAAGCATTCAACAGCCATGAATCCTCCACAGTCATATGGAAGATGTCTCAGGGAGAGACTCAAAGAATTTCCCAGTGCTGCCATGGAGCTTATGGACACATTGCTTTCCATAGATCCTGCGGGGAGAGGAACTGCAGCTTCTGCTCTCAACAGTGAGTTCTTCACATCAAGCCCTTTCCCTTGTGATCCGTCAAGTTTGCCAAAATATCCGCCAAGCAAAGAGATTGATTCGAAAATGCGCTGTGAGGAATCAAGACGACTAATTGGACTGAAGCAATCTCAGGTTGTTCCTTCTGCAAAGGCTAATGCTGAGTTAGTCACGTCACTGCTGAAAAAACAACGCTATTCCAGCTCAAAGTTTCGACTTCAAAGAGACACTGCTTCTTTTTCTATGGTTGATCCACTCAACGAAATTCGAGTTCCGAAATGTGAGAGTAGGAGCTCCAATAGAGCCTCAAATTCAGGGCCTTTAACTCAAGGATCAAGATGTGCAAAGTCTAGAAAGGATCTGAAACATGTTCCCACGGTTTCGAGCAACTATTTTACATCATCTGGTTCGGTTGAATTCGAGACTTTCAAACATATCCAAGAAAGAAATGGAGACTCAAAGACAGAATCAATAATCAAAGACAGAAATCTTCCTCTATCTAGTACTGCATGGGAGTCTTCTAACAAAAACCAGAACAGAACTCAAGACTCAAAAGCCTGCACCAAAGAACCAGCTTTGCACCGGCGAGGACCGAATGAAAATCAAATCTACGTATCAAGGTCATTTATTGTTTCATCGCGCAACGTCGACAAGATGCTTAAAGAGCACGATCATCGATTCAAGAATATGCTCGACGAGCATGGCTTGAAAAGATCGACATGGGAAAAGTTTAAGTTTTAG | 1998 | 42.89 | MGCICSKASAEEDSNHGNSKRAFSMRKHLSDVEISRVDSSKMKERIRERERLNCGDVTVMLFDKKADDSLRSYGEVNELIRKKKEIRDVSILKHPCTGGIGRIPKATEAEQVAAGWPSWLAAVAGEAINGWLPKCAKNFIKLDKIGQGTYSSVYKARDVVQDKVVALKRVRFDNHDSESIKFMAREILVLRRLDDHPNIVKLEGLITSQASCSLYLVFEYMEHDLTGLASRPGLKFTEPQVKCYVKQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDPELTAPMTSRVVTLWYRPPELLLGASKYGAAVDLWSTGCILGELYAGKPVLPGKTEVEQLHMIFKLCGSPSKEYWSKLHLKHSTAMNPPQSYGRCLRERLKEFPSAAMELMDTLLSIDPAGRGTAASALNSEFFTSSPFPCDPSSLPKYPPSKEIDSKMRCEESRRLIGLKQSQVVPSAKANAELVTSLLKKQRYSSSKFRLQRDTASFSMVDPLNEIRVPKCESRSSNRASNSGPLTQGSRCAKSRKDLKHVPTVSSNYFTSSGSVEFETFKHIQERNGDSKTESIIKDRNLPLSSTAWESSNKNQNRTQDSKACTKEPALHRRGPNENQIYVSRSFIVSSRNVDKMLKEHDHRFKNMLDEHGLKRSTWEKFKF | 665 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 51828129 | 51830895 | + | evm.model.ptg000010l.672 | HCH2g0832 | 540057 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH2g0832 | 665 | ProSitePatterns | Protein kinases ATP-binding region signature. | 145 | 168 | IPR017441 | GO:0005524(InterPro) | |
| HCH2g0832 | 665 | MobiDBLite | consensus disorder prediction | 588 | 613 | - | - | |
| HCH2g0832 | 665 | Gene3D | Phosphorylase Kinase; domain 1 | 133 | 227 | - | - | |
| HCH2g0832 | 665 | MobiDBLite | consensus disorder prediction | 588 | 605 | - | - | |
| HCH2g0832 | 665 | FunFam | probable serine/threonine-protein kinase At1g54610 | 223 | 464 | - | - | |
| HCH2g0832 | 665 | SUPERFAMILY | Protein kinase-like (PK-like) | 134 | 432 | IPR011009 | - | |
| HCH2g0832 | 665 | Pfam | Protein kinase domain | 141 | 424 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH2g0832 | 665 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 260 | 272 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH2g0832 | 665 | ProSiteProfiles | Protein kinase domain profile. | 139 | 424 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH2g0832 | 665 | MobiDBLite | consensus disorder prediction | 515 | 531 | - | - | |
| HCH2g0832 | 665 | MobiDBLite | consensus disorder prediction | 511 | 540 | - | - | |
| HCH2g0832 | 665 | SMART | serkin_6 | 139 | 424 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH2g0832 | 665 | PANTHER | CELL DIVISION PROTEIN KINASE | 139 | 424 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
| HCH2g0832 | 665 | FunFam | probable serine/threonine-protein kinase At1g54610 | 126 | 222 | - | - | |
| HCH2g0832 | 665 | CDD | STKc_CDK9_like | 139 | 424 | - | - | |
| HCH2g0832 | 665 | Gene3D | Transferase(Phosphotransferase) domain 1 | 228 | 463 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g0832 | HCH-Chr2:51828129 | HCH7g1131 | HCH-Chr7:44079946 | 1.30E-155 | dispersed | |
| HCH2g0832 | HCH-Chr2:51828129 | HCH2g0833 | HCH-Chr2:51837114 | 2.70E-169 | tandem | |
| HCH10g0472 | HCH-Chr10:3860347 | HCH2g0832 | HCH-Chr2:51828129 | 1.10E-34 | transposed | |
| HCH2g0832 | HCH-Chr2:51828129 | HCH6g0679 | HCH-Chr6:39966838 | 7.60E-188 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81326 | PF00069 | Pkinase | 1.10E-65 | CL0016 | HCH | PK |
Pathway information