Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0833 ATGGGGTGCCAATGTTCCAAGCCTTCTGTTGTTGAAGATAGTCATAACAGACCAGCTGAGAAATTGCCATCACAAAAGGTTCCAGGAGTAAATTCATCAAGAAGAGAGGAGGATAAACGATTGAATTCGTTCAAGAAAGAGGAGAGTTTTCGAAAAAATTCAATAAAAAGAGCGGAGAATGTTCGATTGAAGGTGAAATCGGATGGTGGTGATATGAGAATTGGCTTTTTGGAGAAGAAAGTCAACGGCTCTAATAGGATACATGACGATGAAAGTGAAAAAAAGAAGAGGGCGAGGGAGAGGGAGAAGTTGGAAGCAGTTATTTCTAGTTATCCTGGGAAAGGAAGCATACCAAAGGCGGTAGAAGCGGAGCAGGTTGCGGCTGGATGGCCGAGCTGGCTCTCTGCTGTGGCAGGTGAAGTACTTGAGGGATGGTTGCCAAGAAAAGCTGAAACTTTTGAGAAATTAGAAAAGATTGGACAAGGGACGTATAGTAGTGTTTACAAGGCTCGTGATATCATTAATGGTAAACTGGTTGCTCTAAAAAGAGTTCGATTTGATAATCTGGATGTGGAGAGTATCAAGTTTATGGCACGGGAAATTCTTATCCTACGTAGGCTTGATCACCCAAATGTTATAAAGTTGGAAGGCATGATTACATCGCCCCGATCATGCAGCTTGTACCTTGTTTTTGAATACATGGAGCATGATCTTACCGGACTTGCAGCTTGTCCTGGCGTCAAGTTCAACGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGAGGACTTGATTATTGTCACAGTCGTGGCATCCTCCACCGTGATATAAAGGGATCAAATCTACTAATAGATGACAATGGTATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCCTTTCGACCCTAGTAGTGGCGTTCCCTTAACTAGCCGTGTGGTGACATTGTGGTATCGACCACCAGAACTTCTACTTGGAGCTTCCCACTATGGAGTAGCGGTGGACTTGTGGAGTGCTGGTTGCATACTAGCTGAGCTATATTCCGGGAAGCCTCTCTTGCCTGGAAAAACCGAGGTTGAACAATTGCATAAGATATTTAAGCTTTGTGGGTCACCACCTGAAGATTATTGGAGGAGATTGCAATTACCTCATTCAACCGGATTCAAGACTGCACAGCCATACCGGCGCTGTGTTGGAGAAATGCTCAAGGATTATCCAGCTGCTGCAGTGGCTCTTGTGGATAAATTGCTTTCGGTAGATCCTGCTCATAGAGGAAATGCTGCGGCAGCTCTAAAGAGTGAGTTTTTTATGACTAAACCCCTTGCTTGTGATCCTTCAACTTTGCCGAAATATCCTCCCAGCAAAGAGATTGATGCAAAATTTCGTGGATGCCGAAGGCAGGCGAGAGTGGAGGACAATGACGAAAAAAATTACATGGAAGGAAGGAGACCTAAAGAATCTCATCTTAATCTTGCTCTGAATGCAAAGGATGAAGCAAGCACATTAATGCAGAGAAGGCAAGGTCATTCAAGTTTAAAGGGACGGGGTGATGTGTTCAATTCATGTGGGGACGAAACAGTTTCTGGTTTTCTAATCGGCCCACCTAAACAAACCCAATTGGGTGTAGAGATTTGCAAGGATTCAAGCATGATTTCGCATTCAGGACCATTAATTAGTGGACCAGATTGGATGAAATCTGGGAAGCAACTCGATCACCCTACAATGGCACTAGACCAGGCTAACCTATCAATATTATCTCGCTTGGTAGCAACTAGGTCTATTACATCCGAAGAGCCCCGATACAGGCCTGATCCATCACGATCACAAGTAGGAAGATTGCCAGATTTTGTTAGGGAGTCGGAGTCCACCACAAAGCATGACCGAAAATATTATTCTCACAGAGTTTCAGATTCATATCCAAAAGAGAATGAAAACACGTGTGCTAAGGAACAGACCCTGCTTTTTCACGGGGCTGATGTAAGCAAGCTTTATACATCTGGTCCACTCCTTGGTCCATCAAATAATCTAGATCAGATGCTTAAAGACCGTGACCGCCAGATTCAAGAATACGCTCGACAAACACGACATGGGAAAGCTAACATTCATTTGAAGGGTGCAACGAGCGGAAAAAATTCCGTGTCAGGCCATGGAATGAGATAA 2163 43.74 MGCQCSKPSVVEDSHNRPAEKLPSQKVPGVNSSRREEDKRLNSFKKEESFRKNSIKRAENVRLKVKSDGGDMRIGFLEKKVNGSNRIHDDESEKKKRAREREKLEAVISSYPGKGSIPKAVEAEQVAAGWPSWLSAVAGEVLEGWLPRKAETFEKLEKIGQGTYSSVYKARDIINGKLVALKRVRFDNLDVESIKFMAREILILRRLDHPNVIKLEGMITSPRSCSLYLVFEYMEHDLTGLAACPGVKFNEPQVKCYMQQLLRGLDYCHSRGILHRDIKGSNLLIDDNGILKIADFGLASPFDPSSGVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSAGCILAELYSGKPLLPGKTEVEQLHKIFKLCGSPPEDYWRRLQLPHSTGFKTAQPYRRCVGEMLKDYPAAAVALVDKLLSVDPAHRGNAAAALKSEFFMTKPLACDPSTLPKYPPSKEIDAKFRGCRRQARVEDNDEKNYMEGRRPKESHLNLALNAKDEASTLMQRRQGHSSLKGRGDVFNSCGDETVSGFLIGPPKQTQLGVEICKDSSMISHSGPLISGPDWMKSGKQLDHPTMALDQANLSILSRLVATRSITSEEPRYRPDPSRSQVGRLPDFVRESESTTKHDRKYYSHRVSDSYPKENENTCAKEQTLLFHGADVSKLYTSGPLLGPSNNLDQMLKDRDRQIQEYARQTRHGKANIHLKGATSGKNSVSGHGMR 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 51837114 51841000 + evm.model.ptg000010l.671 HCH2g0833 540058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0833 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0833 720 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524(InterPro)
HCH2g0833 720 Gene3D Transferase(Phosphotransferase) domain 1 241 477 - -
HCH2g0833 720 ProSiteProfiles Protein kinase domain profile. 153 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0833 720 FunFam probable serine/threonine-protein kinase At1g54610 140 235 - -
HCH2g0833 720 MobiDBLite consensus disorder prediction 31 51 - -
HCH2g0833 720 PANTHER CELL DIVISION PROTEIN KINASE 152 437 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH2g0833 720 Gene3D Phosphorylase Kinase; domain 1 148 240 - -
HCH2g0833 720 SUPERFAMILY Protein kinase-like (PK-like) 148 442 IPR011009 -
HCH2g0833 720 MobiDBLite consensus disorder prediction 1 51 - -
HCH2g0833 720 FunFam probable serine/threonine-protein kinase At1g54610 236 477 - -
HCH2g0833 720 Pfam Protein kinase domain 153 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0833 720 CDD STKc_CDK9_like 153 437 - -
HCH2g0833 720 SMART serkin_6 153 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0833 720 MobiDBLite consensus disorder prediction 596 630 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0833 HCH-Chr2:51837114 HCH6g0679 HCH-Chr6:39966838 2.70E-207 dispersed
HCH2g0832 HCH-Chr2:51828129 HCH2g0833 HCH-Chr2:51837114 2.70E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81327 PF00069 Pkinase 2.10E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0833 - - - 0.0