Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH2g0836 | ATGGGGTCTCAAAGATCTGTTGGTTTTCTTGTTGTAGCTTTACTCGGGTTTATTATCAGCTCTTCTCAAGCTTACAAATTCTACGTCGGTGGCAAAGATGGTTGGGTTTTGAACCCTTCTGAGAGCTACAGTCATTGGGCTCAAAGAAACAGGTTTCAAGTCAATGACACTCTCTATTTCAAGTACAAAAACGAGACAGATTCAGTGTTGATCGTAAAAAAGGACGATTACTGCTCTTGCAACCCTAAAAATCCTATACTTACCTTAAAAAATGGAGAATCGATCTTCAAATTTGATCACTCAGGTCCATACTATTTCATCAGTGGCAATGCTGATAGTTGTCTAAAAGGCCAAAAGGTCATTATTGTAGTCCTGGCTGTGAGAAATAAACAACATCACCAAGCTTCGCCGCCATCTCATGCTCCTTCTCCGGTAGCGCCGCCGCAGACACCAATATCGCCTCCCTCGGTTTCGCCACCGAAAGCCAAGAACCCTACTGCAGAATCACCGGTTAATCCCAGTTCACCGGATTCTCCGGCTCCAGCTCCGGCAAAGAATTCAGCTTTGAGTGGACTTGGAGGATCTGTTATATTCAGTTTCAGTCTAGGGATAAATGCTGTTATTTTGAGTAGTTTAATGGGACTTTTTTAG | 651 | 43.16 | MGSQRSVGFLVVALLGFIISSSQAYKFYVGGKDGWVLNPSESYSHWAQRNRFQVNDTLYFKYKNETDSVLIVKKDDYCSCNPKNPILTLKNGESIFKFDHSGPYYFISGNADSCLKGQKVIIVVLAVRNKQHHQASPPSHAPSPVAPPQTPISPPSVSPPKAKNPTAESPVNPSSPDSPAPAPAKNSALSGLGGSVIFSFSLGINAVILSSLMGLF | 216 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 51857593 | 51858549 | - | evm.model.ptg000010l.668 | HCH2g0836 | 540061 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH2g0836 | 216 | Gene3D | - | 23 | 129 | IPR008972 | - | |
| HCH2g0836 | 216 | PANTHER | BLUE COPPER PROTEIN | 20 | 151 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
| HCH2g0836 | 216 | Pfam | Plastocyanin-like domain | 35 | 118 | IPR003245 | GO:0009055(InterPro) | |
| HCH2g0836 | 216 | SUPERFAMILY | Cupredoxins | 24 | 125 | IPR008972 | - | |
| HCH2g0836 | 216 | MobiDBLite | consensus disorder prediction | 140 | 161 | - | - | |
| HCH2g0836 | 216 | CDD | OsENODL1_like | 25 | 125 | IPR041846 | - | |
| HCH2g0836 | 216 | MobiDBLite | consensus disorder prediction | 132 | 186 | - | - | |
| HCH2g0836 | 216 | ProSiteProfiles | Phytocyanin domain profile. | 25 | 126 | IPR003245 | GO:0009055(InterPro) | |
| HCH2g0836 | 216 | FunFam | Early nodulin-like protein 1 | 24 | 129 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g1162 | HCH-Chr12:9699818 | HCH2g0836 | HCH-Chr2:51857593 | 5.20E-25 | dispersed | |
| HCH2g0836 | HCH-Chr2:51857593 | HCH6g0775 | HCH-Chr6:42531118 | 3.00E-32 | dispersed | |
| HCH3g0152 | HCH-Chr3:978920 | HCH2g0836 | HCH-Chr2:51857593 | 4.70E-22 | transposed | |
| HCH12g1062 | HCH-Chr12:7980148 | HCH2g0836 | HCH-Chr2:51857593 | 3.50E-38 | wgd |
Pathway information