Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0854 ATGGAGGATCAGCGAGATGATGTTACACCATCAGAGCAAGGGTCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGTGGAGAAATTCGGATCTGTTTCTTTAGGTCCTCAAGAAGATATTGTAAGTGACAAAGAAGAGTACGCTAGTTCTGACCAAGATGTGTTATCACCTCAAAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTCATGAACCAATTCCAGATGGTTTCTATTCTGTCATTCCGGACAAAAGGCTGAAAGAGCGGTTCAACAGTATTCCTACACTGGATGAGCTCCGCGCTCTGGAGGGGGAAGGTTACAGAACAGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAACTTTCTATGCTTAAACAACTGATCTTGACTCTGGTAAAAGGATTGAGTTCAAATCCAGCTGCAATTATTAAGAAGATTGCTGGATTGGTTTCTGATTTTTACAAACGACCAATATTGGAAAGTCCCGCAAAAGCTGCTGTAGAAGAAACCTCCCACTTGTTTGAGGATAGAGGTATCCAACTGCTTGGACAAATAAAATTTGGTTCATGTCGCCCAAGATCAATCTTATTTAAGGTTCTAGCTGATACTGTGGGACTTGAAAGCCGTCTTATGGTGGGGTTGCCAAATGATGGAGCTATTGGGTGTGTGGACTCCTATAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTTATGCGATTTCCTGGCCAGTTATTACCCCGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGGGAAAGTGATTCTGCAGAAAACGACTCCTGTGATTCACCACTAGAACCCAATAGTCCTCTTTACGGGTTCTCAGAGAGAGTTGATCCCGACAGTACTGAAAAAGATGATAGCCTTCAGTTCCACAGAAAATTTGAAGCATCTTCTAATGCATCAGGTCTTTCATTGCGCAACATGATGTTGCGATCAAGTACGACTCTTGATAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCACGTGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTTTAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAGAGGCACGTCGAATAAGAAGAAGGAGCATTAGCATCACTCCGGAGATTGGTGATGATATCGTGAGGGCTGTGCGAGCAATGAATGAAACATTGAAGCAAAGTCGTCTATTGAGAGAACAAGGAGATGACAGGTCGTTCTCCCCTTCTTCAAATGAAAGAAATGAACAAGTGGGTTCGCAAAGAGCGATATCATTGCCATCGTCGCCCCATGATTATAGGATTCAAAAATCTGAGAGAAGTGGACATTCAGCATATGTGAATGATGAATTAGCCTTAAAATGGTCTAAAATTCTTGAATCTTCGACTTTGGACAACAAACCTCTATTACCTTACTCAGAGTGGAACATTGATTACTCAGAATTGACAGTTGGAATTCGGATTGGAATTGGGTTCTTTGGAGAAGTATTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAGGTTTTCCTAGAGCAAGATCTAACTGCTGAAAATGTTGAAGATTTCTGTAACGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATATTATTTTTGGGTGCATGCACCAAGCCACCTCGCTTATCTATGGTCACTGAATTTATGGAAATGGGTTCCTTATACTCTTTGATCCATTTGAGTGGTCAGAAGAAAAGGCTTAGCTGGCGGAGAAGACTAAAAATGTTGCGTGATATATGCAGGGGTTTGATGTGCATACACCGGATGAAGATAGCTCACCGGGATCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACAGTTAAGATATGTGATTTTGGACTTTCAAGAATATTGATTGAGGCCCCGGCTAGAGGTTCTCCATCTGCAGGAACCCCAGAATGGATGGCTCCTGAGCTCTTCCGAAATGAGCCCTTCACTGAAAAATGTGATATTTTCAGCCTGGGGGTGATTATGTGGGAACTCTGCACGCTAAATAGACCGTGGGAGGGTGTACCACCGGAGAGGGTAGTTTACGCCGTTGGTACTGAGGGATCCCGCCTAGAGATTCCTGAAGGCCCATTGGGCAGGCTTATATCAGATTGTTGGGCAGAACCGCACGAACGACCAAGTTGTGAAGAGATACTCTCACGTTTGCTCGATTGCGAGTACTCTCTTTCTTGA 2364 43.1 MEDQRDDVTPSEQGSSNASWWSSDFVEKFGSVSLGPQEDIVSDKEEYASSDQDVLSPQRASQILWRTGMLHEPIPDGFYSVIPDKRLKERFNSIPTLDELRALEGEGYRTDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEETSHLFEDRGIQLLGQIKFGSCRPRSILFKVLADTVGLESRLMVGLPNDGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSTEKDDSLQFHRKFEASSNASGLSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQSRLLREQGDDRSFSPSSNERNEQVGSQRAISLPSSPHDYRIQKSERSGHSAYVNDELALKWSKILESSTLDNKPLLPYSEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENVEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEFMEMGSLYSLIHLSGQKKRLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILIEAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPHERPSCEEILSRLLDCEYSLS 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52165113 52174306 + evm.model.ptg000010l.650 HCH2g0854 540079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0854 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0854 787 Gene3D Phosphorylase Kinase; domain 1 524 609 - -
HCH2g0854 787 MobiDBLite consensus disorder prediction 361 416 - -
HCH2g0854 787 MobiDBLite consensus disorder prediction 443 489 - -
HCH2g0854 787 Pfam Ethylene-responsive protein kinase Le-CTR1 58 253 - -
HCH2g0854 787 MobiDBLite consensus disorder prediction 272 306 - -
HCH2g0854 787 Gene3D Transferase(Phosphotransferase) domain 1 610 786 - -
HCH2g0854 787 MobiDBLite consensus disorder prediction 445 459 - -
HCH2g0854 787 FunFam Serine/threonine-protein kinase isoform 1 522 609 - -
HCH2g0854 787 MobiDBLite consensus disorder prediction 383 400 - -
HCH2g0854 787 SUPERFAMILY Protein kinase-like (PK-like) 508 779 IPR011009 -
HCH2g0854 787 Pfam Protein tyrosine and serine/threonine kinase 533 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0854 787 ProSiteProfiles Protein kinase domain profile. 531 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0854 787 SMART serkin_6 531 780 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0854 787 ProSitePatterns Protein kinases ATP-binding region signature. 537 558 IPR017441 GO:0005524(InterPro)
HCH2g0854 787 MobiDBLite consensus disorder prediction 460 476 - -
HCH2g0854 787 PANTHER SERINE-THREONINE PROTEIN KINASE 310 779 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH2g0854 787 CDD STKc_MAP3K-like 537 779 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0854 HCH-Chr2:52165113 HCH8g0166 HCH-Chr8:6185226 1.90E-73 dispersed
HCH2g0854 HCH-Chr2:52165113 HCH11g0373 HCH-Chr11:3504491 1.70E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81329 PF07714 PK_Tyr_Ser-Thr 4.30E-58 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0854 - - - 0.0