Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0854 | ATGGAGGATCAGCGAGATGATGTTACACCATCAGAGCAAGGGTCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGTGGAGAAATTCGGATCTGTTTCTTTAGGTCCTCAAGAAGATATTGTAAGTGACAAAGAAGAGTACGCTAGTTCTGACCAAGATGTGTTATCACCTCAAAGAGCATCTCAAATTCTCTGGCGTACTGGAATGCTTCATGAACCAATTCCAGATGGTTTCTATTCTGTCATTCCGGACAAAAGGCTGAAAGAGCGGTTCAACAGTATTCCTACACTGGATGAGCTCCGCGCTCTGGAGGGGGAAGGTTACAGAACAGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAACTTTCTATGCTTAAACAACTGATCTTGACTCTGGTAAAAGGATTGAGTTCAAATCCAGCTGCAATTATTAAGAAGATTGCTGGATTGGTTTCTGATTTTTACAAACGACCAATATTGGAAAGTCCCGCAAAAGCTGCTGTAGAAGAAACCTCCCACTTGTTTGAGGATAGAGGTATCCAACTGCTTGGACAAATAAAATTTGGTTCATGTCGCCCAAGATCAATCTTATTTAAGGTTCTAGCTGATACTGTGGGACTTGAAAGCCGTCTTATGGTGGGGTTGCCAAATGATGGAGCTATTGGGTGTGTGGACTCCTATAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTTATGCGATTTCCTGGCCAGTTATTACCCCGGTCAACTAAGGCAATTTTTATGACCCATATTTCTGCTGCTGGGGAAAGTGATTCTGCAGAAAACGACTCCTGTGATTCACCACTAGAACCCAATAGTCCTCTTTACGGGTTCTCAGAGAGAGTTGATCCCGACAGTACTGAAAAAGATGATAGCCTTCAGTTCCACAGAAAATTTGAAGCATCTTCTAATGCATCAGGTCTTTCATTGCGCAACATGATGTTGCGATCAAGTACGACTCTTGATAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCACGTGGCCGGTCCATGCTTAGTGGGGATAGGAAAGCCTTTAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGTGCTTCAACTTCAGAGGCACGTCGAATAAGAAGAAGGAGCATTAGCATCACTCCGGAGATTGGTGATGATATCGTGAGGGCTGTGCGAGCAATGAATGAAACATTGAAGCAAAGTCGTCTATTGAGAGAACAAGGAGATGACAGGTCGTTCTCCCCTTCTTCAAATGAAAGAAATGAACAAGTGGGTTCGCAAAGAGCGATATCATTGCCATCGTCGCCCCATGATTATAGGATTCAAAAATCTGAGAGAAGTGGACATTCAGCATATGTGAATGATGAATTAGCCTTAAAATGGTCTAAAATTCTTGAATCTTCGACTTTGGACAACAAACCTCTATTACCTTACTCAGAGTGGAACATTGATTACTCAGAATTGACAGTTGGAATTCGGATTGGAATTGGGTTCTTTGGAGAAGTATTTCGTGGCATTTGGAATGGAACAGATGTGGCAATCAAGGTTTTCCTAGAGCAAGATCTAACTGCTGAAAATGTTGAAGATTTCTGTAACGAGATATCAATTCTTAGCCGTCTTCGACATCCTAATGTTATATTATTTTTGGGTGCATGCACCAAGCCACCTCGCTTATCTATGGTCACTGAATTTATGGAAATGGGTTCCTTATACTCTTTGATCCATTTGAGTGGTCAGAAGAAAAGGCTTAGCTGGCGGAGAAGACTAAAAATGTTGCGTGATATATGCAGGGGTTTGATGTGCATACACCGGATGAAGATAGCTCACCGGGATCTAAAAAGTGCAAATTGCCTAGTGAACAAGCATTGGACAGTTAAGATATGTGATTTTGGACTTTCAAGAATATTGATTGAGGCCCCGGCTAGAGGTTCTCCATCTGCAGGAACCCCAGAATGGATGGCTCCTGAGCTCTTCCGAAATGAGCCCTTCACTGAAAAATGTGATATTTTCAGCCTGGGGGTGATTATGTGGGAACTCTGCACGCTAAATAGACCGTGGGAGGGTGTACCACCGGAGAGGGTAGTTTACGCCGTTGGTACTGAGGGATCCCGCCTAGAGATTCCTGAAGGCCCATTGGGCAGGCTTATATCAGATTGTTGGGCAGAACCGCACGAACGACCAAGTTGTGAAGAGATACTCTCACGTTTGCTCGATTGCGAGTACTCTCTTTCTTGA | 2364 | 43.1 | MEDQRDDVTPSEQGSSNASWWSSDFVEKFGSVSLGPQEDIVSDKEEYASSDQDVLSPQRASQILWRTGMLHEPIPDGFYSVIPDKRLKERFNSIPTLDELRALEGEGYRTDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAAVEETSHLFEDRGIQLLGQIKFGSCRPRSILFKVLADTVGLESRLMVGLPNDGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSTEKDDSLQFHRKFEASSNASGLSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQSRLLREQGDDRSFSPSSNERNEQVGSQRAISLPSSPHDYRIQKSERSGHSAYVNDELALKWSKILESSTLDNKPLLPYSEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENVEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEFMEMGSLYSLIHLSGQKKRLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILIEAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPHERPSCEEILSRLLDCEYSLS | 787 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 52165113 | 52174306 | + | evm.model.ptg000010l.650 | HCH2g0854 | 540079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0854 | 787 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 650 | 662 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g0854 | 787 | Gene3D | Phosphorylase Kinase; domain 1 | 524 | 609 | - | - | |
HCH2g0854 | 787 | MobiDBLite | consensus disorder prediction | 361 | 416 | - | - | |
HCH2g0854 | 787 | MobiDBLite | consensus disorder prediction | 443 | 489 | - | - | |
HCH2g0854 | 787 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 58 | 253 | - | - | |
HCH2g0854 | 787 | MobiDBLite | consensus disorder prediction | 272 | 306 | - | - | |
HCH2g0854 | 787 | Gene3D | Transferase(Phosphotransferase) domain 1 | 610 | 786 | - | - | |
HCH2g0854 | 787 | MobiDBLite | consensus disorder prediction | 445 | 459 | - | - | |
HCH2g0854 | 787 | FunFam | Serine/threonine-protein kinase isoform 1 | 522 | 609 | - | - | |
HCH2g0854 | 787 | MobiDBLite | consensus disorder prediction | 383 | 400 | - | - | |
HCH2g0854 | 787 | SUPERFAMILY | Protein kinase-like (PK-like) | 508 | 779 | IPR011009 | - | |
HCH2g0854 | 787 | Pfam | Protein tyrosine and serine/threonine kinase | 533 | 779 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g0854 | 787 | ProSiteProfiles | Protein kinase domain profile. | 531 | 786 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0854 | 787 | SMART | serkin_6 | 531 | 780 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0854 | 787 | ProSitePatterns | Protein kinases ATP-binding region signature. | 537 | 558 | IPR017441 | GO:0005524(InterPro) | |
HCH2g0854 | 787 | MobiDBLite | consensus disorder prediction | 460 | 476 | - | - | |
HCH2g0854 | 787 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 310 | 779 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
HCH2g0854 | 787 | CDD | STKc_MAP3K-like | 537 | 779 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0854 | HCH-Chr2:52165113 | HCH8g0166 | HCH-Chr8:6185226 | 1.90E-73 | dispersed | |
HCH2g0854 | HCH-Chr2:52165113 | HCH11g0373 | HCH-Chr11:3504491 | 1.70E-69 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81329 | PF07714 | PK_Tyr_Ser-Thr | 4.30E-58 | CL0016 | HCH | PK |
Pathway information
