Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0875 ATGAAACTCGAAGAACAGAATGAAAATCTCGACCATCAATCTGAAGAACTGATGTGCAAGACTATTGAAGTTGATACAATTGATCACCACCGTACTATTTCCTCGGCGGAAGCGGCGGCTGTGACGGTGACGGTAATGGAAGCTTCTGATAACCGCGAGAGGAGTGATGACGATGATGATAACCTATTTATCCCTCCGCTTAACTTCTCGATGGTTGATAATGGTATTTTTCGCTCCGGCTTTCCTGATTCTGCTAACTTCTCTTTCCTCCAAACCCTAGGCCTCCGTTCTATTATATGTCTGTGTCCAGAACCGTATCCGGAATCGAATATGGAGTTTCTTAAGTCGAATGAGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCTTTTGTGAATATCCCGGATGATACGATTCGTGAAGCACTGAAAGTTGTCCTTGACATTAGTAATCATCCGATTCTCATACACTGCAAGAGAGGGAAGCATCGAACAGGATGTCTTGTGGGATGCCTGAGAAAATTGCAGAGGTGGTGCCTGACTTCTGTGTTTGATGAGTACCAGAGGTTTGCAGCCGCAAAAGCCAGAATTTCGGACCAGAGGTTTATGGAGTTGTTTGATACCTCTGGCTTCAAGCATCTTCCAATGCCATTTTCATGTTCAAAGAGGTGA 678 43.66 MKLEEQNENLDHQSEELMCKTIEVDTIDHHRTISSAEAAAVTVTVMEASDNRERSDDDDDNLFIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPESNMEFLKSNEIRLYQFGIESYKEPFVNIPDDTIREALKVVLDISNHPILIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDTSGFKHLPMPFSCSKR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52313633 52315842 - evm.model.ptg000010l.629 HCH2g0875 540100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0875 225 Coils Coil 3 23 - -
HCH2g0875 225 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 64 209 IPR029021 -
HCH2g0875 225 PANTHER TYROSINE-PROTEIN PHOSPHATASE 45 217 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
HCH2g0875 225 CDD PFA-DSP_Siw14 62 209 - -
HCH2g0875 225 Pfam Tyrosine phosphatase family 64 215 IPR004861 -
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 119 133 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 136 150 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 63 80 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 100 113 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 219 IPR020422 GO:0006470(InterPro)
HCH2g0875 225 FunFam probable tyrosine-protein phosphatase At1g05000 62 212 - -
HCH2g0875 225 Gene3D Protein tyrosine phosphatase superfamily 62 212 IPR029021 -
HCH2g0875 225 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0272 HCH-Chr8:14877322 HCH2g0875 HCH-Chr2:52313633 3.90E-55 transposed
HCH2g0875 HCH-Chr2:52313633 HCH7g0082 HCH-Chr7:549090 2.10E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0875 K18045 - csv:101222170 340.887