Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0875 ATGAAACTCGAAGAACAGAATGAAAATCTCGACCATCAATCTGAAGAACTGATGTGCAAGACTATTGAAGTTGATACAATTGATCACCACCGTACTATTTCCTCGGCGGAAGCGGCGGCTGTGACGGTGACGGTAATGGAAGCTTCTGATAACCGCGAGAGGAGTGATGACGATGATGATAACCTATTTATCCCTCCGCTTAACTTCTCGATGGTTGATAATGGTATTTTTCGCTCCGGCTTTCCTGATTCTGCTAACTTCTCTTTCCTCCAAACCCTAGGCCTCCGTTCTATTATATGTCTGTGTCCAGAACCGTATCCGGAATCGAATATGGAGTTTCTTAAGTCGAATGAGATTAGATTGTATCAATTTGGAATTGAAAGCTATAAGGAGCCTTTTGTGAATATCCCGGATGATACGATTCGTGAAGCACTGAAAGTTGTCCTTGACATTAGTAATCATCCGATTCTCATACACTGCAAGAGAGGGAAGCATCGAACAGGATGTCTTGTGGGATGCCTGAGAAAATTGCAGAGGTGGTGCCTGACTTCTGTGTTTGATGAGTACCAGAGGTTTGCAGCCGCAAAAGCCAGAATTTCGGACCAGAGGTTTATGGAGTTGTTTGATACCTCTGGCTTCAAGCATCTTCCAATGCCATTTTCATGTTCAAAGAGGTGA 678 43.66 MKLEEQNENLDHQSEELMCKTIEVDTIDHHRTISSAEAAAVTVTVMEASDNRERSDDDDDNLFIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIICLCPEPYPESNMEFLKSNEIRLYQFGIESYKEPFVNIPDDTIREALKVVLDISNHPILIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQRFMELFDTSGFKHLPMPFSCSKR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52313633 52315842 - evm.model.ptg000010l.629 HCH2g0875 540100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0875 225 Coils Coil 3 23 - -
HCH2g0875 225 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 64 209 IPR029021 -
HCH2g0875 225 PANTHER TYROSINE-PROTEIN PHOSPHATASE 45 217 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
HCH2g0875 225 CDD PFA-DSP_Siw14 62 209 - -
HCH2g0875 225 Pfam Tyrosine phosphatase family 64 215 IPR004861 -
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 119 133 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 136 150 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 63 80 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 PRINTS Plant and fungal dual specificity phosphatase signature 100 113 IPR020428 GO:0016791(InterPro)
HCH2g0875 225 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 219 IPR020422 GO:0006470(InterPro)
HCH2g0875 225 FunFam probable tyrosine-protein phosphatase At1g05000 62 212 - -
HCH2g0875 225 Gene3D Protein tyrosine phosphatase superfamily 62 212 IPR029021 -
HCH2g0875 225 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0875 K18045 - - csv:101222170 340.887
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0272 HCH-Chr8:14877322 HCH2g0875 HCH-Chr2:52313633 3.90E-55 transposed
HCH2g0875 HCH-Chr2:52313633 HCH7g0082 HCH-Chr7:549090 2.10E-73 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83