Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0878 | ATGCGGCGTGGAAGACCGTCCGATCCTTTTCCCGAAGCCCCGAAACCAACCGTCCGATTGGAAAATCCCGTTAAAGAGATCCGTTACAGAGGCGTACGGAAGCGCCCGTGGGGCCGTTACGCCGCGGAAATCAGAGATCCCTGGAAAAAAACTAGGGTTTGGCTCGGTACTTTCGATTCCGCCGAGGAAGCCGCACGTGCTTACGACACCGCCGCACGCTCCCTCCGTGGAGCCAAAGCCAAAACCAATTTCCCTTTGCTCCCGCCGCCGCCGATTCCTTTTTACCAATCGCCGCCGGATTTTCACGATTCCGTCGTGTTCGGTAAAATCGAATGTAACAACAATAACAATAATGTTCAAATTCAGAATCAGAATCAGATTCAGGCCAATAGACCTACGTCTAGCAGTTTGAGTTCCACCGTTGAATCATTTAGCGGACCCCGAATTTCAAACCCGTTATCATCGGTTACTCGCCGGAGATCGGTTCATCAGCCAGTATCGCCCGATGATTTCCATAGCGATTGCGATTCGTCGTCTTCGGTCGTTAACGACGACGACAACGATGATGATGACGAGGTTTGCGTTCTTGGTTCTTTCCGTAGAACTTTACCGTTACCCTTTGATCTTAACTTACCGCCACCGATGGACGTTGTCGATTTAACCGACGATGATCTTGAAGCCACGGCCTTGTGCCTCTGA | 699 | 51.22 | MRRGRPSDPFPEAPKPTVRLENPVKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLLPPPPIPFYQSPPDFHDSVVFGKIECNNNNNNVQIQNQNQIQANRPTSSSLSSTVESFSGPRISNPLSSVTRRRSVHQPVSPDDFHSDCDSSSSVVNDDDNDDDDEVCVLGSFRRTLPLPFDLNLPPPMDVVDLTDDDLEATALCL | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 52355929 | 52356627 | + | evm.model.ptg000010l.626 | HCH2g0878 | 540103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0878 | 232 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 22 | 193 | - | - | |
HCH2g0878 | 232 | Gene3D | AP2/ERF domain | 27 | 86 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | Pfam | AP2 domain | 28 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | FunFam | Ethylene-responsive transcription factor 2 | 28 | 86 | - | - | |
HCH2g0878 | 232 | MobiDBLite | consensus disorder prediction | 127 | 189 | - | - | |
HCH2g0878 | 232 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | MobiDBLite | consensus disorder prediction | 127 | 162 | - | - | |
HCH2g0878 | 232 | PRINTS | Ethylene responsive element binding protein signature | 51 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | CDD | AP2 | 28 | 84 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH2g0878 | 232 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1050 | HCH-Chr12:7844007 | HCH2g0878 | HCH-Chr2:52355929 | 1.50E-25 | dispersed | |
HCH2g0878 | HCH-Chr2:52355929 | HCH6g0834 | HCH-Chr6:43115039 | 8.60E-46 | dispersed | |
HCH2g0878 | HCH-Chr2:52355929 | HCH3g0670 | HCH-Chr3:4707334 | 1.30E-25 | wgd | |
HCH2g0878 | HCH-Chr2:52355929 | HCH7g0080 | HCH-Chr7:530031 | 2.00E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33202 | PF00847 | AP2 | 9.10E-14 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g0878 | K09286 | - | csv:101221703 | 250.366 |