Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0878 ATGCGGCGTGGAAGACCGTCCGATCCTTTTCCCGAAGCCCCGAAACCAACCGTCCGATTGGAAAATCCCGTTAAAGAGATCCGTTACAGAGGCGTACGGAAGCGCCCGTGGGGCCGTTACGCCGCGGAAATCAGAGATCCCTGGAAAAAAACTAGGGTTTGGCTCGGTACTTTCGATTCCGCCGAGGAAGCCGCACGTGCTTACGACACCGCCGCACGCTCCCTCCGTGGAGCCAAAGCCAAAACCAATTTCCCTTTGCTCCCGCCGCCGCCGATTCCTTTTTACCAATCGCCGCCGGATTTTCACGATTCCGTCGTGTTCGGTAAAATCGAATGTAACAACAATAACAATAATGTTCAAATTCAGAATCAGAATCAGATTCAGGCCAATAGACCTACGTCTAGCAGTTTGAGTTCCACCGTTGAATCATTTAGCGGACCCCGAATTTCAAACCCGTTATCATCGGTTACTCGCCGGAGATCGGTTCATCAGCCAGTATCGCCCGATGATTTCCATAGCGATTGCGATTCGTCGTCTTCGGTCGTTAACGACGACGACAACGATGATGATGACGAGGTTTGCGTTCTTGGTTCTTTCCGTAGAACTTTACCGTTACCCTTTGATCTTAACTTACCGCCACCGATGGACGTTGTCGATTTAACCGACGATGATCTTGAAGCCACGGCCTTGTGCCTCTGA 699 51.22 MRRGRPSDPFPEAPKPTVRLENPVKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDSAEEAARAYDTAARSLRGAKAKTNFPLLPPPPIPFYQSPPDFHDSVVFGKIECNNNNNNVQIQNQNQIQANRPTSSSLSSTVESFSGPRISNPLSSVTRRRSVHQPVSPDDFHSDCDSSSSVVNDDDNDDDDEVCVLGSFRRTLPLPFDLNLPPPMDVVDLTDDDLEATALCL 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52355929 52356627 + evm.model.ptg000010l.626 HCH2g0878 540103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0878 232 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 193 - -
HCH2g0878 232 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 Pfam AP2 domain 28 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 FunFam Ethylene-responsive transcription factor 2 28 86 - -
HCH2g0878 232 MobiDBLite consensus disorder prediction 127 189 - -
HCH2g0878 232 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 MobiDBLite consensus disorder prediction 127 162 - -
HCH2g0878 232 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 CDD AP2 28 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0878 232 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1050 HCH-Chr12:7844007 HCH2g0878 HCH-Chr2:52355929 1.50E-25 dispersed
HCH2g0878 HCH-Chr2:52355929 HCH6g0834 HCH-Chr6:43115039 8.60E-46 dispersed
HCH2g0878 HCH-Chr2:52355929 HCH3g0670 HCH-Chr3:4707334 1.30E-25 wgd
HCH2g0878 HCH-Chr2:52355929 HCH7g0080 HCH-Chr7:530031 2.00E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33202 PF00847 AP2 9.10E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0878 K09286 - csv:101221703 250.366