Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0899 | ATGGATTGTAATAAACTAACTCGTTTCACACTCGGCAAGCAGTCCTCGCTTAAGCCGGAACGGGAAGATTCTGTTCCGGCCGATGATGAACACGATAATCTGATTGCGATTGATTCTAGGATTAAGCTCATGTACTTGGCTAATGAGGGTGATTTGGATGGGATTAAGGAGCTACTGGATTTGGATACTGATGTGAATTTTCATGACATTGATGGCCGGACTACTTTGCATATTGCTGCTTGTCAGGGCAGGATGGATGTTGTTGAATTGCTGCTCGAAAGAGGTGCGAAAGTCGATGTTCGAGATATTTGGGGCAGCACGCCTCTTGCAGACGCCATACACTACAAGAATCATGATGTGATTAAAATCTTAGAGAAACATGGTGCAAAGCCTCCGATGGCTCCCATGCAAGTGAAAAATGCTCGTGAAGTTCCCGAATATGAGATTGGTTCAAATGAGTTTGATTTTTCTAATAGTGTCAACATTACAAAGGGAACTTTCTGCGTTGCATCATGGCGTGGAACTCGAGTTGCTGTGAAAACACTAGGCGACGAAGTTTTTACTAATGAAGATAAAGTAAAAGCATTTAGGGATGAACTTGCTTTACTTCAGCTGATACGTCATCCGAATGTTGTCCAATTTTTGGGAGCTGTAACGCAAAGTAGTCCAATGATGATTATTACAGAGTTTTTGCCCAAGGGGGACCTTCATGCATTCTTGAAACGTAAGGGTTCCTTGAAGCTAGCAACAGTTGTAAAGTTTGCCCTTGACATTGCTAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATTCATCGGGATCTTGAACCTTCAAATATACTACGGGATGATTCTGGGCACCTGAAAGTAGCAGACTTTGGAGTCAGCAAACTGCTAAAAGTTTCAAACAGGGTTAAAGAAGAAAGACCTGTGACATGTCAAGATACTTCATGGCGATATGTGGCACCAGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTGCTTTGATCTTGCAAGAGATGATAGAGGGTCATCCACCATTTCCAACGAAGCCAGAAAATGAAGTACCTAAAGCTTATGTTGCTAATGATCGCCCTCCATTTATGGCTCCAACTAGCCATTATGCGCATGGAATAAAGGAGCTGATCCAGGAATGCTGGGAGGAGAGGCCATATAGAAGACCCACATTCCGGCATATAATTAGAAGATTGGAAGATATTAATAATCGACTTGCTCAAACATGGAGCTGGAAGGTGAATCCATTCAAATGTCTCTTGCCCCTGGAAAACTTGTTTAAAAGGGAAAGGACTAATCCAAGCAGCAGATCATTCTACTCAGCAAGCAAATGA | 1377 | 41.61 | MDCNKLTRFTLGKQSSLKPEREDSVPADDEHDNLIAIDSRIKLMYLANEGDLDGIKELLDLDTDVNFHDIDGRTTLHIAACQGRMDVVELLLERGAKVDVRDIWGSTPLADAIHYKNHDVIKILEKHGAKPPMAPMQVKNAREVPEYEIGSNEFDFSNSVNITKGTFCVASWRGTRVAVKTLGDEVFTNEDKVKAFRDELALLQLIRHPNVVQFLGAVTQSSPMMIITEFLPKGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVSNRVKEERPVTCQDTSWRYVAPEVYKNEEYDTKVDVFSFALILQEMIEGHPPFPTKPENEVPKAYVANDRPPFMAPTSHYAHGIKELIQECWEERPYRRPTFRHIIRRLEDINNRLAQTWSWKVNPFKCLLPLENLFKRERTNPSSRSFYSASK | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 52483724 | 52489316 | + | evm.model.ptg000010l.605 | HCH2g0899 | 540124 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0899 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515(InterPro) | |
HCH2g0899 | 458 | ProSiteProfiles | Protein kinase domain profile. | 143 | 420 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH2g0899 | 458 | CDD | STKc_MAP3K-like | 162 | 413 | - | - | |
HCH2g0899 | 458 | Pfam | Protein tyrosine and serine/threonine kinase | 170 | 413 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH2g0899 | 458 | SUPERFAMILY | Protein kinase-like (PK-like) | 162 | 414 | IPR011009 | - | |
HCH2g0899 | 458 | Pfam | Ankyrin repeats (3 copies) | 43 | 131 | IPR002110 | GO:0005515(InterPro) | |
HCH2g0899 | 458 | FunFam | Integrin-linked protein kinase family | 22 | 147 | - | - | |
HCH2g0899 | 458 | PIRSF | ILK | 2 | 435 | - | - | |
HCH2g0899 | 458 | Gene3D | - | 9 | 144 | IPR036770 | - | |
HCH2g0899 | 458 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 231 | - | - | |
HCH2g0899 | 458 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 65 | 414 | IPR051681 | GO:0004674(PANTHER) | |
HCH2g0899 | 458 | FunFam | serine/threonine-protein kinase STY46-like | 149 | 232 | - | - | |
HCH2g0899 | 458 | FunFam | Os01g0748600 protein | 142 | 433 | - | - | |
HCH2g0899 | 458 | SUPERFAMILY | Ankyrin repeat | 42 | 134 | IPR036770 | - | |
HCH2g0899 | 458 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 102 | - | - | |
HCH2g0899 | 458 | SMART | ANK_2a | 38 | 67 | IPR002110 | GO:0005515(InterPro) | |
HCH2g0899 | 458 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515(InterPro) | |
HCH2g0899 | 458 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515(InterPro) | |
HCH2g0899 | 458 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 433 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g1022 | HCH-Chr14:37424285 | HCH2g0899 | HCH-Chr2:52483724 | 1.00E-143 | dispersed | |
HCH2g0899 | HCH-Chr2:52483724 | HCH13g1320 | HCH-Chr13:41142912 | 6.70E-42 | dispersed | |
HCH1g0898 | HCH-Chr1:57434513 | HCH2g0899 | HCH-Chr2:52483724 | 1.60E-66 | transposed | |
HCH4g1774 | HCH-Chr4:35794811 | HCH2g0899 | HCH-Chr2:52483724 | 6.40E-80 | transposed | |
HCH2g0899 | HCH-Chr2:52483724 | HCH3g0742 | HCH-Chr3:5357484 | 3.50E-131 | wgd | |
HCH2g0899 | HCH-Chr2:52483724 | HCH3g0654 | HCH-Chr3:4562086 | 3.70E-32 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81330 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-55 | CL0016 | HCH | PK |
Pathway information
