Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0899 ATGGATTGTAATAAACTAACTCGTTTCACACTCGGCAAGCAGTCCTCGCTTAAGCCGGAACGGGAAGATTCTGTTCCGGCCGATGATGAACACGATAATCTGATTGCGATTGATTCTAGGATTAAGCTCATGTACTTGGCTAATGAGGGTGATTTGGATGGGATTAAGGAGCTACTGGATTTGGATACTGATGTGAATTTTCATGACATTGATGGCCGGACTACTTTGCATATTGCTGCTTGTCAGGGCAGGATGGATGTTGTTGAATTGCTGCTCGAAAGAGGTGCGAAAGTCGATGTTCGAGATATTTGGGGCAGCACGCCTCTTGCAGACGCCATACACTACAAGAATCATGATGTGATTAAAATCTTAGAGAAACATGGTGCAAAGCCTCCGATGGCTCCCATGCAAGTGAAAAATGCTCGTGAAGTTCCCGAATATGAGATTGGTTCAAATGAGTTTGATTTTTCTAATAGTGTCAACATTACAAAGGGAACTTTCTGCGTTGCATCATGGCGTGGAACTCGAGTTGCTGTGAAAACACTAGGCGACGAAGTTTTTACTAATGAAGATAAAGTAAAAGCATTTAGGGATGAACTTGCTTTACTTCAGCTGATACGTCATCCGAATGTTGTCCAATTTTTGGGAGCTGTAACGCAAAGTAGTCCAATGATGATTATTACAGAGTTTTTGCCCAAGGGGGACCTTCATGCATTCTTGAAACGTAAGGGTTCCTTGAAGCTAGCAACAGTTGTAAAGTTTGCCCTTGACATTGCTAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATTCATCGGGATCTTGAACCTTCAAATATACTACGGGATGATTCTGGGCACCTGAAAGTAGCAGACTTTGGAGTCAGCAAACTGCTAAAAGTTTCAAACAGGGTTAAAGAAGAAAGACCTGTGACATGTCAAGATACTTCATGGCGATATGTGGCACCAGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTGCTTTGATCTTGCAAGAGATGATAGAGGGTCATCCACCATTTCCAACGAAGCCAGAAAATGAAGTACCTAAAGCTTATGTTGCTAATGATCGCCCTCCATTTATGGCTCCAACTAGCCATTATGCGCATGGAATAAAGGAGCTGATCCAGGAATGCTGGGAGGAGAGGCCATATAGAAGACCCACATTCCGGCATATAATTAGAAGATTGGAAGATATTAATAATCGACTTGCTCAAACATGGAGCTGGAAGGTGAATCCATTCAAATGTCTCTTGCCCCTGGAAAACTTGTTTAAAAGGGAAAGGACTAATCCAAGCAGCAGATCATTCTACTCAGCAAGCAAATGA 1377 41.61 MDCNKLTRFTLGKQSSLKPEREDSVPADDEHDNLIAIDSRIKLMYLANEGDLDGIKELLDLDTDVNFHDIDGRTTLHIAACQGRMDVVELLLERGAKVDVRDIWGSTPLADAIHYKNHDVIKILEKHGAKPPMAPMQVKNAREVPEYEIGSNEFDFSNSVNITKGTFCVASWRGTRVAVKTLGDEVFTNEDKVKAFRDELALLQLIRHPNVVQFLGAVTQSSPMMIITEFLPKGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVSNRVKEERPVTCQDTSWRYVAPEVYKNEEYDTKVDVFSFALILQEMIEGHPPFPTKPENEVPKAYVANDRPPFMAPTSHYAHGIKELIQECWEERPYRRPTFRHIIRRLEDINNRLAQTWSWKVNPFKCLLPLENLFKRERTNPSSRSFYSASK 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52483724 52489316 + evm.model.ptg000010l.605 HCH2g0899 540124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0899 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
HCH2g0899 458 ProSiteProfiles Protein kinase domain profile. 143 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0899 458 CDD STKc_MAP3K-like 162 413 - -
HCH2g0899 458 Pfam Protein tyrosine and serine/threonine kinase 170 413 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0899 458 SUPERFAMILY Protein kinase-like (PK-like) 162 414 IPR011009 -
HCH2g0899 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515(InterPro)
HCH2g0899 458 FunFam Integrin-linked protein kinase family 22 147 - -
HCH2g0899 458 PIRSF ILK 2 435 - -
HCH2g0899 458 Gene3D - 9 144 IPR036770 -
HCH2g0899 458 Gene3D Phosphorylase Kinase; domain 1 155 231 - -
HCH2g0899 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 65 414 IPR051681 GO:0004674(PANTHER)
HCH2g0899 458 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
HCH2g0899 458 FunFam Os01g0748600 protein 142 433 - -
HCH2g0899 458 SUPERFAMILY Ankyrin repeat 42 134 IPR036770 -
HCH2g0899 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
HCH2g0899 458 SMART ANK_2a 38 67 IPR002110 GO:0005515(InterPro)
HCH2g0899 458 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
HCH2g0899 458 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
HCH2g0899 458 Gene3D Transferase(Phosphotransferase) domain 1 232 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1022 HCH-Chr14:37424285 HCH2g0899 HCH-Chr2:52483724 1.00E-143 dispersed
HCH2g0899 HCH-Chr2:52483724 HCH13g1320 HCH-Chr13:41142912 6.70E-42 dispersed
HCH1g0898 HCH-Chr1:57434513 HCH2g0899 HCH-Chr2:52483724 1.60E-66 transposed
HCH4g1774 HCH-Chr4:35794811 HCH2g0899 HCH-Chr2:52483724 6.40E-80 transposed
HCH2g0899 HCH-Chr2:52483724 HCH3g0742 HCH-Chr3:5357484 3.50E-131 wgd
HCH2g0899 HCH-Chr2:52483724 HCH3g0654 HCH-Chr3:4562086 3.70E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81330 PF07714 PK_Tyr_Ser-Thr 1.50E-55 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0899 - - - 0.0