Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0905 ATGCAGCAAGATCGTAAAAAGAGTTCAACAGAAGTGGAGTTTTTCTCTGATTATGGAGATGCCAGTAGGTACAAAATTCAGGAAGTTATTGGGAAAGGAAGTTATGGTGTTGTTTGTTCAGCAACCGACACTCGTACAGGTGAAAAAGTTGCGATAAAGAAGATACATAATATTTTCGAACATATATCGGATGCGGTTCGAATTCTTCGCGAGATAAAGCTGCTTAGACTTCTACGGCATCCTGATATTGTTGAAATTAAACACATTATGTTGCCACCTTCAAGGAGGGATTTCAAAGATATCTATGTTGTTTTTGAGCTGATGGAATCAGATCTTCATCAAGTTATTAAAGCCAATGATGATCTGACACGAGAGCACTATCAATTTTTTCTTTACCAGCTTCTTCGTGCGTTAAAATATATCCACACAGCAAATGTCTACCACCGAGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGCAAACTTAAAATCTGTGATTTTGGATTGGCGAGAGTTGCATTCAGTGACACACCAACAACAGTTTTCTGGACGGATTATGTTGCTACAAGATGGTATCGAGCTCCGGAGCTATGTGGTTCATTTTACTCCAGGTATACACCTGCAATCGATATATGGAGTATTGGCTGCATATTCGCCGAAGTATTAACAGGGAAGCCCCTTTTCCCCGGTAAAAATGTTGTTCACCAGCTTGATTTGATGACTGATCTTCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTAAGAAATGATAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCAGTGCCATTTGCTCAAAAGTTTCCAAATGCAGATCCTTTAGCCCTGAGGCTACTGGAAAGGTTGCTTGCTTTTGATCCAAAGGACAGGCCAACTGCTGAAGAGGCATTGGCTGATCCATACTTCAAGGGATTGTCAAGAATTGAGAGGGAACCTTCCTGCCAGCCAATTACAAAGATGGAATTTGAATTTGAGAGGCGGAGGGTCACAAAAGATGACATTCAAGAGCTAATCTTCCGTGAGATTCTAGAATATCATCCTCAGCTACTTAACGACTACACAAATGGAACTGAGAGAACAAATTTTCTTTATCCAAGTGCTATAGACCAATTTAGAAAGCAGTTTGCACATCTTGAGGAAAATGGTGGTAAAAATGGGCCTGTTATTCCTCTTGAAAGAAAGCATGTCTCCCTCCCAAGGTCTACAGTTGTACACTCGAACACAATCCATTCTAAGGACCAACCAAATAATGTACCCTACAAAGACGTGCAGATCCCCGAAGATGCACACAGCAGGAATTCCCGAGATGGTGAAGGACGGTTAACCAATTCAAGGACCATGCAGGCACCACAAAAAATTCCATCAGCTAAGCCTGGAAGAGTAGTGGGACCAGTAGTAGCTGATGAAAATGGAAGGCTTTTGAAGGAACCGTACGATCCAAGAACGTTGATTAGAGGTGCCATTCTTCCTCCTGCATATTGTTACCAAAGATCTATAGCAGGCAATTTAGAAAGATCTGCAGCGGAAACAAAATTGGATATTTCATTGAGGGCCAAACAATCTTCCCAGTGTGGGATGGCATCCAAATTAGCACCAGACATAGCTATCAGCATTGACTCGAACCCCTTCTATATGATGCGTGCCGGAGTGAATAAAGTAGAACACAAGGACCAAATCTCCATAGATGCTAACTTTCTGCAGGCCAAGGTTGCCCAATATGGCGGTCTAAGTGCCGCAACTGCCACCACCGCATCAGTTGCTCACCGAAAGGTGGTTGCCAGCCAGTTCAGTGCGACAAAGATGTACTAA 1848 41.88 MQQDRKKSSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSATDTRTGEKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLSRIEREPSCQPITKMEFEFERRRVTKDDIQELIFREILEYHPQLLNDYTNGTERTNFLYPSAIDQFRKQFAHLEENGGKNGPVIPLERKHVSLPRSTVVHSNTIHSKDQPNNVPYKDVQIPEDAHSRNSRDGEGRLTNSRTMQAPQKIPSAKPGRVVGPVVADENGRLLKEPYDPRTLIRGAILPPAYCYQRSIAGNLERSAAETKLDISLRAKQSSQCGMASKLAPDIAISIDSNPFYMMRAGVNKVEHKDQISIDANFLQAKVAQYGGLSAATATTASVAHRKVVASQFSATKMY 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52532151 52536720 - evm.model.ptg000010l.599 HCH2g0905 540130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0905 615 Gene3D Phosphorylase Kinase; domain 1 39 361 - -
HCH2g0905 615 FunFam Mitogen-activated protein kinase 110 338 - -
HCH2g0905 615 ProSiteProfiles Protein kinase domain profile. 24 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0905 615 MobiDBLite consensus disorder prediction 438 452 - -
HCH2g0905 615 Pfam Protein kinase domain 24 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0905 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 356 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH2g0905 615 SMART serkin_6 24 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0905 615 Gene3D Transferase(Phosphotransferase) domain 1 110 338 - -
HCH2g0905 615 ProSitePatterns MAP kinase signature. 59 162 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0905 615 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
HCH2g0905 615 ProSitePatterns Protein kinases ATP-binding region signature. 30 54 IPR017441 GO:0005524(InterPro)
HCH2g0905 615 MobiDBLite consensus disorder prediction 419 475 - -
HCH2g0905 615 CDD STKc_TDY_MAPK 23 360 - -
HCH2g0905 615 FunFam Mitogen-activated protein kinase 14 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0905 HCH-Chr2:52532151 HCH8g1125 HCH-Chr8:46964354 1.10E-193 dispersed
HCH6g0615 HCH-Chr6:36974428 HCH2g0905 HCH-Chr2:52532151 3.40E-219 transposed
HCH6g1629 HCH-Chr6:49363903 HCH2g0905 HCH-Chr2:52532151 1.80E-206 transposed
HCH2g0905 HCH-Chr2:52532151 HCH3g0634 HCH-Chr3:4412700 4.30E-44 wgd
HCH2g0905 HCH-Chr2:52532151 HCH7g0055 HCH-Chr7:379128 2.10E-253 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81331 PF00069 Pkinase 4.00E-67 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0905 - - - 0.0