Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0907 ATGTCAAATGAAGAGAATGATCCTCATAATTACCACCACAATGATCCTTTCAATTACAACTACGACCATGATGTCAAAGGGTTTGAAGCTCTTCCTTTGAGAAGTCCATATGATGCATTTGATCCCTCCTGTGTAGGTTTTGCTGACTTCTTACATGGATCATTGGACTATGGCTATAACACCCTCTCAGCTGCCCTTGAGATGTCATGCTCGTCGTCCGAAGTTATTTCTCTGCTCGATCACGATGTTCCGAAGAAGTCTCCCGGTGTCGGGGAGTCTGCGGGTACTAGCGAAAACCCGTCGACGCCGAATTCTTCGGTGTCTTCTTCATCCGATGAGGCTGCAGCGGACGGTGATTCGGCCAAGAGTGAGAAAAGCAAGGAGGTGAAAGAGTGTGAAGGTAAAGATGGAGAAGATCAGAGCTGTCGAAAAGCGGATCAACGAAGAAAAAAGAAGGGGAAAGGAGAAAAGGGGCCACGTTTTGCCTTCTTGACAAAGAGTGAAATAGACCACCTTGAAGATGGATATAGATGGAGAAAATATGGTCAGAAAGCAGTCAAAAACAGCCCTTTTCCAAGAAGTTATTATAAATGCACAAGTCAAAATTGCACTGTGAAGAAACGAGTAGAGAGATCATTCCAAGATCCCTCTTTTGTAATAACCACATATGAAGGGAAACATAACCACTATTATCCGGTAACCCTTCGAGGCAACGCCACCGGGATGTCGCCATCGTCCTCCCTTTTCTCAACGGCAGCGCCATTGTTTCCGTCCACCTTACCTCCAGAACTACTGGGTCGGTTGCTTCCATCGAACTCCATAGGAGCTGATCCGAGGGCGGCCAACTCCTTCAGTATGTATCGGCATCAGAACCTTGATCTCCAGGTTCCTGACTATGGCCTATTGCAAGATTTAGTTCCATCATTCAAAAAGAAGCAAGGGCCATGA 948 46.2 MSNEENDPHNYHHNDPFNYNYDHDVKGFEALPLRSPYDAFDPSCVGFADFLHGSLDYGYNTLSAALEMSCSSSEVISLLDHDVPKKSPGVGESAGTSENPSTPNSSVSSSSDEAAADGDSAKSEKSKEVKECEGKDGEDQSCRKADQRRKKKGKGEKGPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPFPRSYYKCTSQNCTVKKRVERSFQDPSFVITTYEGKHNHYYPVTLRGNATGMSPSSSLFSTAAPLFPSTLPPELLGRLLPSNSIGADPRAANSFSMYRHQNLDLQVPDYGLLQDLVPSFKKKQGP 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52563592 52564887 + evm.model.ptg000010l.597 HCH2g0907 540132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0907 315 Gene3D WRKY domain 156 233 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0907 315 MobiDBLite consensus disorder prediction 82 159 - -
HCH2g0907 315 MobiDBLite consensus disorder prediction 92 116 - -
HCH2g0907 315 FunFam WRKY transcription factor 57 158 232 - -
HCH2g0907 315 MobiDBLite consensus disorder prediction 117 146 - -
HCH2g0907 315 ProSiteProfiles WRKY domain profile. 167 232 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0907 315 SUPERFAMILY WRKY DNA-binding domain 165 232 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0907 315 SMART WRKY_cls 172 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0907 315 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH2g0907 315 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 101 239 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0149 HCH-Chr2:10414838 HCH2g0907 HCH-Chr2:52563592 2.30E-25 dispersed
HCH2g0907 HCH-Chr2:52563592 HCH6g1759 HCH-Chr6:50053472 9.30E-35 dispersed
HCH2g0907 HCH-Chr2:52563592 HCH7g0047 HCH-Chr7:332760 1.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33204 PF03106 WRKY 2.10E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0907 - - - 0.0