Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0908 ATGTCATCTGGAAGTTCATTGAATGATGATTTATCGAAGAAGACTTCATTTTGGGGATTGTCATTGTGGGTTTTGATTTGCATTTGCATTGGTGCAGTGATAGTTTTGATTCTGGGCTTCTTATCCATATGGGTCCTGTTTCACAAAAAATCCAAGAGAGTAGACAAGTTCCCCGTTTCCCAAATACCGAACATTCCAAAAGATATTAGAATAGACCAGGTTGGGAATCAAATTTCCAATGACCACCCTGAAAATACAATTCTTTTCATTGATGACAAAAGAAATGATAAAAAATCAGAGCTGATGTCAGTTCATTTGGGGGTGAGTAAAGCTAGTGAACCTGATAATAATAGCCAATGCAGTTCCACTTATCAACAGGAAAGGGGGTATTCGCAATCTGGAGAAGAAGGAAGCTCAGGAAATGCTCATAAGAAGCCTTCACGGTCATATGGAGGACTTGTGCCACCATCTCCTCTCGTTGGTTTGCCAGAAATTTCACATCTTGGGTGGGGCCACTGGTTTACTCTCAGGGATCTGGAACTTGCAACTAATCGCTTCTCTACTGAAAATATCATTGGAGAGGGAGGATATGGGATTGTATATAAGGGCAGACTCATCAATGGAACCGAGGTTGCAGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTCAGAGTTGAAGTGGAGGCTATTGGCCGTGTTCGGCATAAGAATCTGGTGCGACTTCTGGGATATTGCATAGAAGGAGTTCATAGGATGCTTGTGTATGAATATGTGAACAATGGCAATCTAGAACAATGGCTGCACGGAGCCATGTTCCAACATGGCTCATTTACCTGGGAGGCTCGTATGAAGGTGCTTCTTGGTACTGCTAAGGCGCTTGCTTATTTACATGAAGCGATTGAGCCAAAAGTTGTACACAGAGATATAAAATCAAGCAACATTTTGATTGATGATGAATTTAATTCCAAAGTTTCTGATTTTGGATTGGCAAAGCTTTTGGGCTCAGGAGAGAGTCACATCACGACCAGAGTTATGGGAACATTTGGTTATGTAGCACCAGAATATGCTAATACAGGCTTGTTGAATGAAAAGAGCGACATTTATAGCTTCGGTGTCCTCCTGCTAGAAGCAATTACTGGGAGGGACCCTGTGGACTATGCACGTCCTTCTGACGAGGTTAATCTTGTTGAGTGGCTAAAGATGATGGTAGGAACAAGGAGAGCGGAAGAAGTTGTGGACACAAACCTTGAAGTTAAACCAACTACTCGTGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGGTGTATTGATCCTGAATCAAACAAGAGACCCAAGATGAGCCAAGTTGTAAGAATGCTTGAAGCTGACGAATTTCCACTGCATGAGGATAGAAGGAACCGAAAAAGCCGATCGATGAGCTTGGAAATCGAGTCCACGAAAGAAATATCTGGTTCAGACCAGATGGATAACAAGGCTGCCCAGTCGGAGAGCCACACATCTGAGACAAGTCGTGGATAA 1530 42.61 MSSGSSLNDDLSKKTSFWGLSLWVLICICIGAVIVLILGFLSIWVLFHKKSKRVDKFPVSQIPNIPKDIRIDQVGNQISNDHPENTILFIDDKRNDKKSELMSVHLGVSKASEPDNNSQCSSTYQQERGYSQSGEEGSSGNAHKKPSRSYGGLVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENIIGEGGYGIVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGRVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMFQHGSFTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNSKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSDEVNLVEWLKMMVGTRRAEEVVDTNLEVKPTTRALKRALLVALRCIDPESNKRPKMSQVVRMLEADEFPLHEDRRNRKSRSMSLEIESTKEISGSDQMDNKAAQSESHTSETSRG 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52568230 52571302 - evm.model.ptg000010l.596 HCH2g0908 540133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0908 509 Pfam Protein kinase domain 187 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0908 509 MobiDBLite consensus disorder prediction 480 509 - -
HCH2g0908 509 SUPERFAMILY Protein kinase-like (PK-like) 170 462 IPR011009 -
HCH2g0908 509 MobiDBLite consensus disorder prediction 110 145 - -
HCH2g0908 509 CDD STKc_IRAK 192 458 - -
HCH2g0908 509 SMART serkin_6 186 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0908 509 Gene3D Phosphorylase Kinase; domain 1 168 261 - -
HCH2g0908 509 Coils Coil 206 226 - -
HCH2g0908 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0908 509 ProSitePatterns Protein kinases ATP-binding region signature. 192 215 IPR017441 GO:0005524(InterPro)
HCH2g0908 509 MobiDBLite consensus disorder prediction 110 152 - -
HCH2g0908 509 MobiDBLite consensus disorder prediction 463 479 - -
HCH2g0908 509 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
HCH2g0908 509 PANTHER OS01G0323000 PROTEIN 6 493 IPR052232 -
HCH2g0908 509 FunFam Putative receptor-like protein kinase 168 261 - -
HCH2g0908 509 ProSiteProfiles Protein kinase domain profile. 186 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0908 509 MobiDBLite consensus disorder prediction 463 509 - -
HCH2g0908 509 Gene3D Transferase(Phosphotransferase) domain 1 262 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0908 HCH-Chr2:52568230 HCH8g0026 HCH-Chr8:1079082 1.60E-182 dispersed
HCH2g0908 HCH-Chr2:52568230 HCH7g0046 HCH-Chr7:325328 3.60E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81332 PF00069 Pkinase 8.00E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0908 - - - 0.0