Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0911 ATGGCTGCTTCATCAATGGCTCTCTCTTCCCCTTCTCTGGCCGGCCAAGCCGTCAAGTTGGCTCCCTCTGCCTCTGACCTCCTCGGAGAAGGGCGTGTCACCATGAGGAAAACTGCCAGCAAACCCAAAACAGTCTCATCTGGAAGCCCGTGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAATCTCCCTCCTATCTCACCGGAGAATTTCCCGGTGACTACGGCTGGGACACCGCCGGTCTCTCGGCCGACCCCGAGACCTTTGCTAAAAACCGTGAGCTTGAGGTGATCCACTCAAGATGGGCCATGCTTGGAGCTTTGGGGTGTGTCTTCCCGGAGCTTCTCTCCCGCAACGGAGTCAAGTTCGGGGAAGCCGTGTGGTTCAAAGCTGGTTCCCAAATCTTCAGTGAAGGAGGACTTGACTATTTGGGCAACCCAAGCTTAGTCCATGCTCAAAGCATTTTGGCCATATGGGCAACTCAGGTTGTGCTAATGGGTGCAGTAGAGGGCTACAGAATCGCCGGGGGGCCTCTCGGTGAGATCACCGACCCAATCTACCCCGGTGGAAGCTTTGACCCATTGGGACTTGCCGATGACCCAGAGGCTTTCGCAGAGCTTAAGGTAAAAGAGCTCAAGAATGGAAGATTAGCCATGTTTTCCATGTTTGGATTCTTTGTACAAGCCATTGTGACTGGAAAGGGACCTTTGGAGAATTTGGCTGATCACTTGGCTGATCCTGTGAACAACAATGCATGGGCTTATGCCACAAATTTTGTCCCTGGAAAGTGA 804 52.99 MAASSMALSSPSLAGQAVKLAPSASDLLGEGRVTMRKTASKPKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52581164 52581967 - evm.model.ptg000010l.593 HCH2g0911 540136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0911 267 Pfam Chlorophyll A-B binding protein 68 234 IPR022796 -
HCH2g0911 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH2g0911 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
HCH2g0911 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
HCH2g0911 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0909 HCH-Chr2:52575532 HCH2g0911 HCH-Chr2:52581164 3.80E-154 dispersed
HCH2g0911 HCH-Chr2:52581164 HCH2g0913 HCH-Chr2:52586840 3.20E-153 dispersed
HCH2g0910 HCH-Chr2:52578299 HCH2g0911 HCH-Chr2:52581164 4.20E-153 tandem
HCH2g0911 HCH-Chr2:52581164 HCH2g0912 HCH-Chr2:52583806 1.10E-153 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0911 K08912 - csv:101213845 528.48