Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0912 | ATGGCTGCTTCATCAATGGCTCTCTCTTCCCCTTCTCTCGCCGGCCAAGCCGTCAAGTTGGCGCCCTCTGCATCTGACCTCCTCGGTGAAGGCCGTGTCACCATGAGGAAAACTGCCAGCAAACCAAAAACAGTCTCATCTGGAAGCCCATGGTATGGCCCTGACCGTGTTAAGTACTTGGGTCCATTCTCTGGTGAATCCCCCTCCTATCTCACCGGAGAATTCCCAGGTGACTATGGCTGGGACACCGCCGGTCTCTCGGCCGACCCCGAGACCTTTGCTAAAAACCGGGAGCTTGAAGTGATCCACTCAAGATGGGCCATGCTTGGAGCTTTGGGTTGTGTCTTTCCGGAGCTTCTCTCCCGTAACGGAGTCAAGTTCGGGGAAGCCGTGTGGTTCAAAGCTGGATCCCAAATCTTCAGTGAAGGAGGACTTGACTATTTGGGCAACCCAAGCTTAGTCCATGCTCAGAGCATTTTGGCCATATGGGCAACTCAGGTTGTCTTGATGGGTGCAGTTGAGGGCTACAGAATTGCCGGCGGGCCTCTCGGTGAGATTACCGACCCAATCTACCCTGGTGGAAGCTTTGATCCTTTGGGACTTGCTGATGACCCAGAGGCTTTCGCTGAGCTTAAGGTAAAAGAGCTCAAGAATGGAAGATTAGCCATGTTTTCCGTGTTTGGATTCTTTGTACAAGCCATTGTCACTGGCAAAGGACCTTTGGAGAATTTGGCGGATCACTTGGCTGATCCTGTGAACAACAATGCATGGGCTTACGCCACAAATTTTGTCCCTGGAAAGTGA | 804 | 52.24 | MAASSMALSSPSLAGQAVKLAPSASDLLGEGRVTMRKTASKPKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 52583806 | 52584609 | - | evm.model.ptg000010l.592 | HCH2g0912 | 540137 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0912 | 267 | Gene3D | Chlorophyll a/b binding protein domain | 58 | 260 | - | - | |
HCH2g0912 | 267 | SUPERFAMILY | Chlorophyll a-b binding protein | 50 | 264 | - | - | |
HCH2g0912 | 267 | Pfam | Chlorophyll A-B binding protein | 68 | 234 | IPR022796 | - | |
HCH2g0912 | 267 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 4 | 267 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro) | |
HCH2g0912 | 267 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 58 | 260 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0910 | HCH-Chr2:52578299 | HCH2g0912 | HCH-Chr2:52583806 | 1.20E-152 | dispersed | |
HCH2g0912 | HCH-Chr2:52583806 | HCH2g0914 | HCH-Chr2:52589627 | 1.40E-153 | dispersed | |
HCH2g0911 | HCH-Chr2:52581164 | HCH2g0912 | HCH-Chr2:52583806 | 1.10E-153 | tandem | |
HCH2g0912 | HCH-Chr2:52583806 | HCH2g0913 | HCH-Chr2:52586840 | 1.40E-153 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g0912 | K08912 | - | csv:101213845 | 526.939 |