Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0930 ATGAAGGAGAGTGGAAGAAAACAAGGAACTCTCTCGCCATGCGCGGCTTGTAAGCTTCTCCGGCGGAGATGCGCTCAAGATTGCGTTTTCGCTCCTTACTTCCCCGCCGATGAGCCCCACAAGTTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGCAATGTCAACAAGATGTTACAGGAATTGCCGGAGCATCAACGGAGCGACGCCGTGAGCTCAATGGTGTACGAAGCGAACGCCAGAGTAAGAGACCCGGTTTACGGCTGCGTCGGCGCTATATCTTCGCTGCAGCATCAGATCGATCTTCTTCAAACGCAATTAGCGATAGCTCAGGCAGAAGTAGTTCATATGCGGATGCGTCAACTCCCTTCCACGTCAAATCCACCCACCGCCGCCGCCACCCATTCGCCGGAAACCGCCTCCCCTTCCGGCAAACATAACTTTCCGGTGCAAAATAAGTCCTTTTTTTCTATGGACATGATTGATCACGACAACATGGGAGAGTCCTTGTGGTCGTGTTAG 519 52.6 MKESGRKQGTLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQHQIDLLQTQLAIAQAEVVHMRMRQLPSTSNPPTAAATHSPETASPSGKHNFPVQNKSFFSMDMIDHDNMGESLWSC 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52711609 52713765 + evm.model.ptg000010l.574 HCH2g0930 540155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0930 172 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
HCH2g0930 172 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
HCH2g0930 172 Coils Coil 92 112 - -
HCH2g0930 172 MobiDBLite consensus disorder prediction 119 147 - -
HCH2g0930 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1192 HCH-Chr11:44214987 HCH2g0930 HCH-Chr2:52711609 2.80E-32 dispersed
HCH1g0301 HCH-Chr1:46982579 HCH2g0930 HCH-Chr2:52711609 6.40E-37 dispersed
HCH1g0310 HCH-Chr1:48342677 HCH2g0930 HCH-Chr2:52711609 1.40E-17 dispersed
HCH2g0930 HCH-Chr2:52711609 HCH3g1473 HCH-Chr3:52775859 1.90E-42 dispersed
HCH3g0911 HCH-Chr3:7895873 HCH2g0930 HCH-Chr2:52711609 3.00E-61 transposed
HCH14g1105 HCH-Chr14:37979157 HCH2g0930 HCH-Chr2:52711609 3.00E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33208 PF03195 LOB 9.20E-44 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0930 - - - 0.0