Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0950 ATGAGATTGATTTCCATGGCTTGTTTTGCTCTCTTCTACTCTATCCTCCTCTTTTCTTTGGATTTCGTTGCGGCAACATCGGCGGTTCGACCGTTGGTCGCTGCCGCTACTCCGAACAAGGGTCGGGTTCCGCCACAGCCGCCAGCGGCTTCTTTACTGTCACATTCCTACTACAGCCGTACGTGTCCAGATGTTGAGGGTATCATCCATAGGAAAATGGTGGCTTGGGTTAAGAAGGACTTCACCTTGGCTGCGGCTATCATTCGCTTGCATTTCCACGACTGTGCTGTTAGGGGATGCGATGGATCAATTCTTCTTAACTATCAAAGAAGTGAAAGAAAAGCCATAGCCAGCAAAACCCTAAGAGGATTCCAGGTAATCGACGACATCAAAAGAGAACTCGAAATAAAATGTCCCAAAACAGTCTCTTGCTCCGACATCCTCACCGCCGCCGCCAGAGACGCCACCATTTTAGCCGGCGGCCCCTTTTGGGAAGTCCCATTTGGTCGTAAAGATGGAGCAATTTCCTTAGCTTCTGAAGCTGAAAAAGTCCCTCAAGGCCATGAAAACATCACCGTTTTGACCCAATATTTCCGAATCCTCGGACTCGATGTTCTTGATTTGGTCGCTCTCTCTGGGGCCCACACAATAGGAAGAGCTGCATGCCATACGATTAAAAACAGGCTTTACAATTTCAACAAAACTGGAAAACCTGACACTTCATTGAAACCCTTGTTTTTGAATTTACTGAGAAAACAGTGTAAGAACGATGTCACGAGCAACGACAACCTCGTTTTTCTCGATTCGACGACTCCAAGGATGTTTGATACTGCTTATTTTACTAATCTTCAGAAGAAACTAGGGCTTCTTTCGACGGATCAAGCGTTGTTTTCTGATTCAAGAACTTCTTCGTTTGTTGATTTAATGGCGAATCAGCCGTTTCTTTTTGATAGTCAATTTGCTGCGTCGATGGTGAAGTTGGGAAACGTGGGAGTTCTTACGAGGAAAAATGAAGGAGAGATTCGTGTAAATTGTAATTTCGTTAACAGGAGAAGAATTTGA 1062 45.01 MRLISMACFALFYSILLFSLDFVAATSAVRPLVAAATPNKGRVPPQPPAASLLSHSYYSRTCPDVEGIIHRKMVAWVKKDFTLAAAIIRLHFHDCAVRGCDGSILLNYQRSERKAIASKTLRGFQVIDDIKRELEIKCPKTVSCSDILTAAARDATILAGGPFWEVPFGRKDGAISLASEAEKVPQGHENITVLTQYFRILGLDVLDLVALSGAHTIGRAACHTIKNRLYNFNKTGKPDTSLKPLFLNLLRKQCKNDVTSNDNLVFLDSTTPRMFDTAYFTNLQKKLGLLSTDQALFSDSRTSSFVDLMANQPFLFDSQFAASMVKLGNVGVLTRKNEGEIRVNCNFVNRRRI 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52882651 52884934 + evm.model.ptg000010l.554 HCH2g0950 540175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0950 353 ProSitePatterns Peroxidases active site signature. 84 95 IPR019794 GO:0004601(InterPro)
HCH2g0950 353 ProSitePatterns Peroxidases proximal heme-ligand signature. 207 217 IPR019793 -
HCH2g0950 353 PRINTS Plant peroxidase signature 86 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 206 218 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 62 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 160 175 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 282 299 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 266 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 322 335 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 122 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Plant peroxidase signature 141 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 CDD secretory_peroxidase 53 348 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g0950 353 Pfam Peroxidase 71 311 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 FunFam Peroxidase 56 197 - -
HCH2g0950 353 PANTHER PEROXIDASE 25-RELATED 54 345 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH2g0950 353 Gene3D - 56 349 - -
HCH2g0950 353 FunFam Peroxidase 185 327 - -
HCH2g0950 353 Gene3D Peroxidase, domain 2 185 327 - -
HCH2g0950 353 PRINTS Haem peroxidase superfamily signature 160 172 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Haem peroxidase superfamily signature 142 159 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Haem peroxidase superfamily signature 268 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Haem peroxidase superfamily signature 207 222 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 PRINTS Haem peroxidase superfamily signature 84 98 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 SUPERFAMILY Heme-dependent peroxidases 53 349 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0950 353 ProSiteProfiles Plant heme peroxidase family profile. 52 349 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0950 HCH-Chr2:52882651 HCH3g0483 HCH-Chr3:3111123 1.10E-105 dispersed
HCH2g0950 HCH-Chr2:52882651 HCH14g0262 HCH-Chr14:30532058 7.10E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0950 K00430 - csv:101204209 534.258