Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0956 ATGTTCCATGCCACCAAGAAACCCTCGTCTATGAATTCCCATGAAAGGCCAATGTGTGTTCAAGGAGATTCCGGTCTGGTTCTCACCACTGACCCTAAACCCCGTCTCCGGTGGACCGTCGAGCTCCACGAACGCTTCGTCGATGCCGTTACTCAGCTCGGAGGCCCTGATAAGGCAACACCAAAAACCATCATGAGGGTTATGGGTGTTAAAGGACTAACTCTTTACCATCTTAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAACAACCTCATAAGGAATTCAATGATCAATCCATTAAGGATGGTATGAGAGCTTCGGCCTTAGATCTTCAGAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGACGACTGCATGAACAAATAGAGGTTCAGAGACATCTCCAATTGAGAATTGAGGCTCAAGGGAAGTACATGCAAAGCATATTGGAGAAAGCCTGTCAAACCCTAGCAGGAGAAAACATGGCAGCTACCGGACCTTTCAAAAACCCTAATTCCAGTATGGGAAATAATAATAACATCAGCAATATTTCAGACGTCGCCATGGGAGCAGGAGGAGGAGGGATGAAAGATTTCATCTCCCCCCCTCACAACTTCCCACCTTTCCAAGATCTCAACAATATATTTACAAGTGAAGCCCTAGGTGGCAACGGCCTTCAACAACACAACATGGATAGACCACCGGCACCGCCTCTCATCGACTGTTTGAAGAGGCCTAGTCCCTTCATTTCCGGCGGTGGAAAGAGCCCCATTTTCTGGCCGGACGATCTCCGGCTGCAAGACTTGGGAACCTCTCCGGCACTCGACGAACCTTTCAAAGGCGACCGGATAATTCAGATGGCTCCACCGCCCGATTTGGACTCTCTACAGTTAGAAATGTATGAATCTAAGCCGGCCCTTCTCGGCGGCGGCAACGATGCAATGACTGAAAAGAAATTTGATGCATCGCTGAAGCTGGAAAGGCCATCGCCCAGACAGTCAGAGGATAGGATGAATGCTACAATGTCACAGGGAAGAAATTCTTCATTTGGTTAA 1092 47.89 MFHATKKPSSMNSHERPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALDLQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAATGPFKNPNSSMGNNNNISNISDVAMGAGGGGMKDFISPPHNFPPFQDLNNIFTSEALGGNGLQQHNMDRPPAPPLIDCLKRPSPFISGGGKSPIFWPDDLRLQDLGTSPALDEPFKGDRIIQMAPPPDLDSLQLEMYESKPALLGGGNDAMTEKKFDASLKLERPSPRQSEDRMNATMSQGRNSSFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52937380 52939913 - evm.model.ptg000010l.548 HCH2g0956 540181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0956 363 FunFam Myb family transcription factor 32 90 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 1 26 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 319 363 - -
HCH2g0956 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
HCH2g0956 363 MobiDBLite consensus disorder prediction 330 346 - -
HCH2g0956 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
HCH2g0956 363 Gene3D - 32 90 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 347 363 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 1 17 - -
HCH2g0956 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
HCH2g0956 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
HCH2g0956 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 210 IPR046955 GO:0003700(InterPro)
HCH2g0956 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0956 HCH-Chr2:52937380 HCH9g1420 HCH-Chr9:46720663 5.50E-31 dispersed
HCH11g0650 HCH-Chr11:28513017 HCH2g0956 HCH-Chr2:52937380 8.40E-25 transposed
HCH4g0893 HCH-Chr4:5710994 HCH2g0956 HCH-Chr2:52937380 3.10E-30 transposed
HCH5g0122 HCH-Chr5:738127 HCH2g0956 HCH-Chr2:52937380 4.00E-21 transposed
HCH5g0229 HCH-Chr5:1315845 HCH2g0956 HCH-Chr2:52937380 1.20E-32 transposed
HCH7g1427 HCH-Chr7:47007003 HCH2g0956 HCH-Chr2:52937380 2.10E-39 transposed
HCH8g0215 HCH-Chr8:9062991 HCH2g0956 HCH-Chr2:52937380 5.00E-18 transposed
HCH9g1143 HCH-Chr9:15306445 HCH2g0956 HCH-Chr2:52937380 2.50E-15 transposed
HCH2g0956 HCH-Chr2:52937380 HCH7g0014 HCH-Chr7:143284 1.70E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33213 PF00249 Myb_DNA-binding 2.00E-06 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0956 - - - 0.0