Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0956 | ATGTTCCATGCCACCAAGAAACCCTCGTCTATGAATTCCCATGAAAGGCCAATGTGTGTTCAAGGAGATTCCGGTCTGGTTCTCACCACTGACCCTAAACCCCGTCTCCGGTGGACCGTCGAGCTCCACGAACGCTTCGTCGATGCCGTTACTCAGCTCGGAGGCCCTGATAAGGCAACACCAAAAACCATCATGAGGGTTATGGGTGTTAAAGGACTAACTCTTTACCATCTTAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAACAACCTCATAAGGAATTCAATGATCAATCCATTAAGGATGGTATGAGAGCTTCGGCCTTAGATCTTCAGAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGACGACTGCATGAACAAATAGAGGTTCAGAGACATCTCCAATTGAGAATTGAGGCTCAAGGGAAGTACATGCAAAGCATATTGGAGAAAGCCTGTCAAACCCTAGCAGGAGAAAACATGGCAGCTACCGGACCTTTCAAAAACCCTAATTCCAGTATGGGAAATAATAATAACATCAGCAATATTTCAGACGTCGCCATGGGAGCAGGAGGAGGAGGGATGAAAGATTTCATCTCCCCCCCTCACAACTTCCCACCTTTCCAAGATCTCAACAATATATTTACAAGTGAAGCCCTAGGTGGCAACGGCCTTCAACAACACAACATGGATAGACCACCGGCACCGCCTCTCATCGACTGTTTGAAGAGGCCTAGTCCCTTCATTTCCGGCGGTGGAAAGAGCCCCATTTTCTGGCCGGACGATCTCCGGCTGCAAGACTTGGGAACCTCTCCGGCACTCGACGAACCTTTCAAAGGCGACCGGATAATTCAGATGGCTCCACCGCCCGATTTGGACTCTCTACAGTTAGAAATGTATGAATCTAAGCCGGCCCTTCTCGGCGGCGGCAACGATGCAATGACTGAAAAGAAATTTGATGCATCGCTGAAGCTGGAAAGGCCATCGCCCAGACAGTCAGAGGATAGGATGAATGCTACAATGTCACAGGGAAGAAATTCTTCATTTGGTTAA | 1092 | 47.89 | MFHATKKPSSMNSHERPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALDLQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAATGPFKNPNSSMGNNNNISNISDVAMGAGGGGMKDFISPPHNFPPFQDLNNIFTSEALGGNGLQQHNMDRPPAPPLIDCLKRPSPFISGGGKSPIFWPDDLRLQDLGTSPALDEPFKGDRIIQMAPPPDLDSLQLEMYESKPALLGGGNDAMTEKKFDASLKLERPSPRQSEDRMNATMSQGRNSSFG | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 52937380 | 52939913 | - | evm.model.ptg000010l.548 | HCH2g0956 | 540181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0956 | 363 | FunFam | Myb family transcription factor | 32 | 90 | - | - | |
HCH2g0956 | 363 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
HCH2g0956 | 363 | MobiDBLite | consensus disorder prediction | 319 | 363 | - | - | |
HCH2g0956 | 363 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677(InterPro) | |
HCH2g0956 | 363 | MobiDBLite | consensus disorder prediction | 330 | 346 | - | - | |
HCH2g0956 | 363 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
HCH2g0956 | 363 | Gene3D | - | 32 | 90 | - | - | |
HCH2g0956 | 363 | MobiDBLite | consensus disorder prediction | 347 | 363 | - | - | |
HCH2g0956 | 363 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
HCH2g0956 | 363 | Pfam | Myb-like DNA-binding domain | 35 | 85 | IPR001005 | - | |
HCH2g0956 | 363 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - | |
HCH2g0956 | 363 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 210 | IPR046955 | GO:0003700(InterPro) | |
HCH2g0956 | 363 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0956 | HCH-Chr2:52937380 | HCH9g1420 | HCH-Chr9:46720663 | 5.50E-31 | dispersed | |
HCH11g0650 | HCH-Chr11:28513017 | HCH2g0956 | HCH-Chr2:52937380 | 8.40E-25 | transposed | |
HCH4g0893 | HCH-Chr4:5710994 | HCH2g0956 | HCH-Chr2:52937380 | 3.10E-30 | transposed | |
HCH5g0122 | HCH-Chr5:738127 | HCH2g0956 | HCH-Chr2:52937380 | 4.00E-21 | transposed | |
HCH5g0229 | HCH-Chr5:1315845 | HCH2g0956 | HCH-Chr2:52937380 | 1.20E-32 | transposed | |
HCH7g1427 | HCH-Chr7:47007003 | HCH2g0956 | HCH-Chr2:52937380 | 2.10E-39 | transposed | |
HCH8g0215 | HCH-Chr8:9062991 | HCH2g0956 | HCH-Chr2:52937380 | 5.00E-18 | transposed | |
HCH9g1143 | HCH-Chr9:15306445 | HCH2g0956 | HCH-Chr2:52937380 | 2.50E-15 | transposed | |
HCH2g0956 | HCH-Chr2:52937380 | HCH7g0014 | HCH-Chr7:143284 | 1.70E-93 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33213 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | HCH | TF |
Pathway information
