Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0956 ATGTTCCATGCCACCAAGAAACCCTCGTCTATGAATTCCCATGAAAGGCCAATGTGTGTTCAAGGAGATTCCGGTCTGGTTCTCACCACTGACCCTAAACCCCGTCTCCGGTGGACCGTCGAGCTCCACGAACGCTTCGTCGATGCCGTTACTCAGCTCGGAGGCCCTGATAAGGCAACACCAAAAACCATCATGAGGGTTATGGGTGTTAAAGGACTAACTCTTTACCATCTTAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAACAACCTCATAAGGAATTCAATGATCAATCCATTAAGGATGGTATGAGAGCTTCGGCCTTAGATCTTCAGAGAAATAGTGGATCTTCTTCCAGCTTAATGGACCGTAGTATGAACGAAATGCAAATGGAGGTCCAGAGACGACTGCATGAACAAATAGAGGTTCAGAGACATCTCCAATTGAGAATTGAGGCTCAAGGGAAGTACATGCAAAGCATATTGGAGAAAGCCTGTCAAACCCTAGCAGGAGAAAACATGGCAGCTACCGGACCTTTCAAAAACCCTAATTCCAGTATGGGAAATAATAATAACATCAGCAATATTTCAGACGTCGCCATGGGAGCAGGAGGAGGAGGGATGAAAGATTTCATCTCCCCCCCTCACAACTTCCCACCTTTCCAAGATCTCAACAATATATTTACAAGTGAAGCCCTAGGTGGCAACGGCCTTCAACAACACAACATGGATAGACCACCGGCACCGCCTCTCATCGACTGTTTGAAGAGGCCTAGTCCCTTCATTTCCGGCGGTGGAAAGAGCCCCATTTTCTGGCCGGACGATCTCCGGCTGCAAGACTTGGGAACCTCTCCGGCACTCGACGAACCTTTCAAAGGCGACCGGATAATTCAGATGGCTCCACCGCCCGATTTGGACTCTCTACAGTTAGAAATGTATGAATCTAAGCCGGCCCTTCTCGGCGGCGGCAACGATGCAATGACTGAAAAGAAATTTGATGCATCGCTGAAGCTGGAAAGGCCATCGCCCAGACAGTCAGAGGATAGGATGAATGCTACAATGTCACAGGGAAGAAATTCTTCATTTGGTTAA 1092 47.89 MFHATKKPSSMNSHERPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGMRASALDLQRNSGSSSSLMDRSMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAATGPFKNPNSSMGNNNNISNISDVAMGAGGGGMKDFISPPHNFPPFQDLNNIFTSEALGGNGLQQHNMDRPPAPPLIDCLKRPSPFISGGGKSPIFWPDDLRLQDLGTSPALDEPFKGDRIIQMAPPPDLDSLQLEMYESKPALLGGGNDAMTEKKFDASLKLERPSPRQSEDRMNATMSQGRNSSFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52937380 52939913 - evm.model.ptg000010l.548 HCH2g0956 540181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0956 363 FunFam Myb family transcription factor 32 90 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 1 26 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 319 363 - -
HCH2g0956 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
HCH2g0956 363 MobiDBLite consensus disorder prediction 330 346 - -
HCH2g0956 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
HCH2g0956 363 Gene3D - 32 90 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 347 363 - -
HCH2g0956 363 MobiDBLite consensus disorder prediction 1 17 - -
HCH2g0956 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
HCH2g0956 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
HCH2g0956 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 210 IPR046955 GO:0003700(InterPro)
HCH2g0956 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0956 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0956 HCH-Chr2:52937380 HCH9g1420 HCH-Chr9:46720663 5.50E-31 dispersed
HCH11g0650 HCH-Chr11:28513017 HCH2g0956 HCH-Chr2:52937380 8.40E-25 transposed
HCH4g0893 HCH-Chr4:5710994 HCH2g0956 HCH-Chr2:52937380 3.10E-30 transposed
HCH5g0122 HCH-Chr5:738127 HCH2g0956 HCH-Chr2:52937380 4.00E-21 transposed
HCH5g0229 HCH-Chr5:1315845 HCH2g0956 HCH-Chr2:52937380 1.20E-32 transposed
HCH7g1427 HCH-Chr7:47007003 HCH2g0956 HCH-Chr2:52937380 2.10E-39 transposed
HCH8g0215 HCH-Chr8:9062991 HCH2g0956 HCH-Chr2:52937380 5.00E-18 transposed
HCH9g1143 HCH-Chr9:15306445 HCH2g0956 HCH-Chr2:52937380 2.50E-15 transposed
HCH2g0956 HCH-Chr2:52937380 HCH7g0014 HCH-Chr7:143284 1.70E-93 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33213 PF00249 Myb_DNA-binding 2.00E-06 CL0123 HCH TF