Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0957 ATGAGTTTATCAGTAATTGCAAGAACGAAAGCGATAGCAAAAGCTCGATCAAGCATCATTAATCTCTCTGCACGGAATTCTCACTCTCACACTCTTTTCTTTCGTCAGATCAATACGGAATCGCAGAGCATTGCTTCTCGTCTTAACAGTTCTGGATTGTTACGAAGCCAAGGACTTATTGGCGGGAACTGGATTGATGCTTATGATGGAAAGACATTTGAGGTTCGTAATCCAGCAACCGGTGAAGTCATCGCCAATGTCCCATTAATGGGCGAAAGGGAAACCAATGATGCCGTTTCTTCAGCTTATGATGCATTTAAGTCTTGGAGCAAGCTCACTGCTGCTGATCGGAGCAATCGCCTACGTAAATGGTATGATCTCATAATTTCTCACAAAGAAGAGATTGGGCAACTTATAACCTTAGAGCAAGGCAAACCCTTAAAAGAAGCCTTGGGTGAGGTTAACTATGGGGCCAGCTTCATCGAGTTCTTTGCTGAGGAAGCAAAACGAATTTACGGTGATATCATCCCACCAACTCTACCCGATCGTCGACTTTTTGTCTTAAAGCAGCCGGTTGGAGTTGTTGGTGTAGTTACACCTTGGAACTTTCCCTTGGCTATGATCACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACAGTGGTTATAAAACCCTCTGAACTAACACCCTTCACGGCTTTAGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCACCAGGTGTTGTGAATGTGGTTATGGGGAACGCTCCTGCCATTGGAGATGCTATACTTGCAAATTCACAGGTGAGAAAAATCACTTTTACGGGCTCAACAGCAGTTGGAAAGAAGTTGATGGCAGGAGCTGCTGGGACTGTTAAAAGGGTATCTTTGGAACTTGGCGGTAATGCACCTTGCATAATCTTTGATGATGCTGACGTAGATGTTGCAGTAAAAGGAGCTCTTGCAGCAAAGTTCCGAAATAGTGGACAAACTTGTGTCTGTGCGAATAGAATTATTGTTCAAGAAGGTATATACGAGAAATTTGCAAATGCTTTCTCAGAAGCTGTCCGGAATCTGCGAGTTGGTGATGGATTTAGTGAAGGTGTAGCTCAGGGTCCCTTGATCAATGAAGCTGCTGTTCAGAAGGTCGAGTCATTTCTTCAAGATGCTGTTGCAAAGGGTGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGAATGACTTTTTTTGAGCCTACTGTTATTACTGATGTAAACAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCTGTTGCACCCTTATTGCCTTTCAGAACCGAGGAGGAAGCAATAGCACTTGCAAATGATACAAATGCTGGATTAGCTGCTTATATTTTCACAAATAATATTCAACGCTCGTGGAGAGTTACTGAAGCTCTTGAATATGGACTTGTTGGTATCAATGAAGGCATTATTTCTACTGAGGTGGCTCCATTTGGTGGTGTTAAACAGTCAGGTCTTGGTCGGGAAGGGTCTAAATATGGGATTGATGAATATCTGGAGCTGAAATATGTATGCTTGGGGAATATGGACCGCCAGTGA 1596 43.61 MSLSVIARTKAIAKARSSIINLSARNSHSHTLFFRQINTESQSIASRLNSSGLLRSQGLIGGNWIDAYDGKTFEVRNPATGEVIANVPLMGERETNDAVSSAYDAFKSWSKLTAADRSNRLRKWYDLIISHKEEIGQLITLEQGKPLKEALGEVNYGASFIEFFAEEAKRIYGDIIPPTLPDRRLFVLKQPVGVVGVVTPWNFPLAMITRKVGPALASGCTVVIKPSELTPFTALAAAELSLQAGIPPGVVNVVMGNAPAIGDAILANSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGALAAKFRNSGQTCVCANRIIVQEGIYEKFANAFSEAVRNLRVGDGFSEGVAQGPLINEAAVQKVESFLQDAVAKGAKVLLGGKRHSLGMTFFEPTVITDVNSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGLVGINEGIISTEVAPFGGVKQSGLGREGSKYGIDEYLELKYVCLGNMDRQ 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 52943966 52957560 - evm.model.ptg000010l.547 HCH2g0957 540182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0957 531 CDD ALDH_F5_SSADH_GabD 75 525 - -
HCH2g0957 531 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 303 492 IPR016163 GO:0016620(InterPro)
HCH2g0957 531 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 70 517 IPR016162 GO:0016491(InterPro)
HCH2g0957 531 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 48 528 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
HCH2g0957 531 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 299 306 IPR029510 GO:0016491(InterPro)
HCH2g0957 531 SUPERFAMILY ALDH-like 54 529 IPR016161 GO:0016491(InterPro)
HCH2g0957 531 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 327 338 IPR016160 GO:0016491(InterPro)
HCH2g0957 531 Pfam Aldehyde dehydrogenase family 64 523 IPR015590 GO:0016491(InterPro)
HCH2g0957 531 FunFam Succinate-semialdehyde dehydrogenase I 70 311 - -
HCH2g0957 531 FunFam Succinate-semialdehyde dehydrogenase I 303 492 - -
HCH2g0957 531 NCBIfam succinate-semialdehyde dehydrogenase 75 521 IPR010102 GO:0009013(InterPro)|GO:0009450(InterPro)
HCH2g0957 531 FunFam Aldehyde dehydrogenase, putative 495 521 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0957 HCH-Chr2:52943966 HCH8g0766 HCH-Chr8:44285862 5.50E-96 dispersed
HCH2g0957 HCH-Chr2:52943966 HCH8g1376 HCH-Chr8:48501650 3.10E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0957 K17761 - csv:101217352 891.338