Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0970 ATGAAGTTCTGTTCAGCATTGCCTCCTCTGCTCTTTGTAATTATTAATCTCCTTCACATTGCCATTGCTGACTTGAAATCAGATAAGCAAGCCCTTCTGGACTTTGCTTCTTCTGTTCCGCATCGTCGGAGACTCAACTGGAATAATGCTTCATCAGTATGTGCATCTTGGGTTGGCGTCACTTGCAGTCCAGATGGTACTCACGTGCTTACCCTCCGACTACCCGGGATTGGACTCGTGGGTTCCATTCCTCCTAACACCTTAGGGAAACTAGATGGTCTCAGAATTCTCAGTCTACGATCAAATCTCCTTAATGGAAAAATACCTTCTGATATTACCTCACTTCCTTCTATCCAATATCTATACCTTCAACATAATAACTTCACAGGTGACTTTCCTGCCTCCTTTTCTCCCACACTTAATGTATTGGATTTATCATTCAATTCATTAGATGGAAAGATTTCAAAGACCATACAGAATTTGAAACAACTTACTGGATTGAATCTCCAAAACAACAATCTTTCTGGTCCCATACCAGATCTCAACCTCCCTAAGCTCAAGCATTTAAACATAAGTTTTAACCATCTTAATGGTTCGATCCCTACCTCTCTTAAAACATTTCCAAATTCATCCTTTATTGGAAACCCTTTATTATGTGGATTACCTTTAAAAGCCTGCTTTACACTTCCTTCACCGTCTCCAGCTCCTAATTTTCCACCTTCTCCTGCCGTTTCTCAAAAACAGAACTCCAAAAACAAACTGAAGATAGGAGTTATAATTGCCATTGCAGTTGGTGGATTTTTGCTCCTATTTCTTTTAGTTCTTTTTGTGGTTTTCTGCTGTTTAAAGGAAAAAGATGGTGGAGGCGTTGGCGTGAGAAAAGGGAAGGCTTCTGGTGGTGGGAGAAGTGAAAAACCGAAAGAGGAGTTTGGAAGTGGTGTGCAGGAGCCTGAGAAAAACAAGCTGGTGTTTTTTGAAGGCTGTTCATTCAATTTTGATCTTGAAGACCTGTTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGTAGCTATGGAACAGCTTATAAAGCCGTCCTGGAAGAACCGACCACTGTTGTCGTGAAACGATTGAAGGAAGTGGTTGTGGGAAAGAGGGAGTTTGAACAGCAGATGGAGGTGGTGGGAAGGGTTGGACAGCACCCAAATGTTATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCAGAAGGCAGCTTGTCGTCAATATTGCATGGAAACAGGGGAGGGGAAAGAACTCCACTAGACTGGGACTCGAGAGTGAAAATCTCTCTTGCAACTGCGAAGGGAATTGCTCATATCCATACTGTGGGTGGTCCAAAAGTCACCCATGGAAATATCAAGGCCTCAAATGTCCTCCTCACTCAAGATAACAATGCACTTGTCTCTGACTTTGGCCTCGCCCCTCTTATGAACGTCCCGACTTCTCGAACTGCAGGTTACCGTGCTCCCGAGGTGATTGAAACTCGTAAACACACACACAAGTCGGATGTGTATAGCTTCGGTGTTCTGCTTCTTGAAATGTTAACTGGAAAAGCTCCCCTCCAATCACCAGGTCGTGACGATATAGTCGACCTCCCTAGGTGGGTGCAGTCAGTAGTGAGGGAAGAATGGACAGCTGAGGTTTTTGATGTCGAGCTGATGAGGTACCAGAATATTGAAGAAGAGATGGTGCAGATGTTGCAAATAGCCATGACTTGTGTGGCAAAGGTTCCAGACATGAGACCCAACATGGATGAAGTAGTTAGAATGATCGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCTTCTTCTGAAGATAACAAATCCAAGGACTCAAATAAACGAAGAATCTTCACCACAGCTTCTTCCTCTCCTCGTATTCGTTCTTTTCTTCAAGTCTCTGAAACCCTTATCGATCTCTGCTTCAAGGAGGAAGTTATGGCTTCAAAACGGATTCTTAAAGAGCTCAAGGATTTACAGAAGGATCCTCCTACTTCTTGCAGTGCTGGTCCTGTGGCTGAAGATATGTTTCATTGGCAAGCAACTATTATGGGACCTGCTGATTCCCCCTATGCAGGAGGTGTATTCTTAGTTTCAATTCATTTTCCTCCGGACTACCCTTTCAAGCCCCCAAAGGTTGCGTTTAGGACTAAGGTGTTCCACCCGAACATTAATAGCAATGGAAGCATATGTCTGGACATTCTTAAAGAACAGTGGAGCCCTGCGCTAACCATTTCTAAGGTGCTGTTGTCCATCTGCTCTCTGTTAACTGATCCCAACCCCGACGATCCACTTGTTCCTGAAATAGCTCATATGTACAAGACTGACAGAGCCAAGTATGAAGCTACTGCACGCAGTTGGACTCAAAAGTATGCCATGGGTTGA 2430 43.91 MKFCSALPPLLFVIINLLHIAIADLKSDKQALLDFASSVPHRRRLNWNNASSVCASWVGVTCSPDGTHVLTLRLPGIGLVGSIPPNTLGKLDGLRILSLRSNLLNGKIPSDITSLPSIQYLYLQHNNFTGDFPASFSPTLNVLDLSFNSLDGKISKTIQNLKQLTGLNLQNNNLSGPIPDLNLPKLKHLNISFNHLNGSIPTSLKTFPNSSFIGNPLLCGLPLKACFTLPSPSPAPNFPPSPAVSQKQNSKNKLKIGVIIAIAVGGFLLLFLLVLFVVFCCLKEKDGGGVGVRKGKASGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMEVVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPEGSLSSILHGNRGGERTPLDWDSRVKISLATAKGIAHIHTVGGPKVTHGNIKASNVLLTQDNNALVSDFGLAPLMNVPTSRTAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDDIVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKVPDMRPNMDEVVRMIEEIRQSDSENRPSSEDNKSKDSNKRRIFTTASSSPRIRSFLQVSETLIDLCFKEEVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARSWTQKYAMG 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53026899 53033429 - evm.model.ptg000010l.534 HCH2g0970 540195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0970 809 Pfam Ubiquitin-conjugating enzyme 666 802 IPR000608 -
HCH2g0970 809 Gene3D Ribonuclease Inhibitor 181 227 IPR032675 -
HCH2g0970 809 MobiDBLite consensus disorder prediction 608 630 - -
HCH2g0970 809 Gene3D Ubiquitin Conjugating Enzyme 656 809 IPR016135 -
HCH2g0970 809 Pfam Leucine rich repeat 81 128 IPR001611 GO:0005515(InterPro)
HCH2g0970 809 FunFam pollen receptor-like kinase 1 307 414 - -
HCH2g0970 809 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 735 750 IPR023313 -
HCH2g0970 809 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 415 619 - -
HCH2g0970 809 FunFam Leucine-rich repeat receptor-like protein kinase 27 137 - -
HCH2g0970 809 FunFam Ubiquitin-conjugating enzyme 28, E2 662 809 - -
HCH2g0970 809 SUPERFAMILY Protein kinase-like (PK-like) 343 606 IPR011009 -
HCH2g0970 809 Gene3D Transferase(Phosphotransferase) domain 1 415 634 - -
HCH2g0970 809 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
HCH2g0970 809 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
HCH2g0970 809 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 662 808 IPR000608 -
HCH2g0970 809 Gene3D Ribonuclease Inhibitor 25 180 IPR032675 -
HCH2g0970 809 ProSiteProfiles Protein kinase domain profile. 339 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0970 809 Pfam Protein kinase domain 343 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0970 809 MobiDBLite consensus disorder prediction 298 314 - -
HCH2g0970 809 Pfam Leucine Rich Repeat 164 180 IPR001611 GO:0005515(InterPro)
HCH2g0970 809 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515(InterPro)
HCH2g0970 809 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
HCH2g0970 809 MobiDBLite consensus disorder prediction 291 314 - -
HCH2g0970 809 CDD STKc_IRAK 345 608 - -
HCH2g0970 809 CDD UBCc 664 803 IPR000608 -
HCH2g0970 809 ProSitePatterns Protein kinases ATP-binding region signature. 345 376 IPR017441 GO:0005524(InterPro)
HCH2g0970 809 SUPERFAMILY UBC-like 660 808 IPR016135 -
HCH2g0970 809 SUPERFAMILY L domain-like 38 225 - -
HCH2g0970 809 MobiDBLite consensus disorder prediction 608 633 - -
HCH2g0970 809 PANTHER OS05G0588300 PROTEIN 13 624 IPR050994 -
HCH2g0970 809 FunFam Leucine-rich repeat receptor-like protein kinase 138 226 - -
HCH2g0970 809 SMART ubc_7 665 808 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0445 HCH-Chr10:3554421 HCH2g0970 HCH-Chr2:53026899 3.50E-129 dispersed
HCH11g0363 HCH-Chr11:3408610 HCH2g0970 HCH-Chr2:53026899 1.60E-92 dispersed
HCH11g0738 HCH-Chr11:35914113 HCH2g0970 HCH-Chr2:53026899 4.80E-53 dispersed
HCH12g1461 HCH-Chr12:39921661 HCH2g0970 HCH-Chr2:53026899 9.90E-80 dispersed
HCH13g1386 HCH-Chr13:41786959 HCH2g0970 HCH-Chr2:53026899 9.90E-17 dispersed
HCH2g0970 HCH-Chr2:53026899 HCH9g0846 HCH-Chr9:5984425 4.60E-179 dispersed
HCH6g0636 HCH-Chr6:38115525 HCH2g0970 HCH-Chr2:53026899 1.70E-37 dispersed
HCH6g1417 HCH-Chr6:47981755 HCH2g0970 HCH-Chr2:53026899 8.20E-21 dispersed
HCH7g0592 HCH-Chr7:5443954 HCH2g0970 HCH-Chr2:53026899 5.80E-21 dispersed
HCH8g0422 HCH-Chr8:38539587 HCH2g0970 HCH-Chr2:53026899 1.30E-25 dispersed
HCH8g1510 HCH-Chr8:49284753 HCH2g0970 HCH-Chr2:53026899 3.70E-34 dispersed
HCH9g0954 HCH-Chr9:7088962 HCH2g0970 HCH-Chr2:53026899 1.60E-24 dispersed
HCH2g0970 HCH-Chr2:53026899 HCH5g0563 HCH-Chr5:3886949 3.30E-217 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81334 PF00069 Pkinase 7.90E-38 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0970 - - - 0.0