Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0973 ATGGCCGATCAAGTTCTGAATGATGCAAAGGACGAAGTTACAGAAATTGCTTCCTTTGATCCTACTAAAAAGAAGAAGAAAAAGAAAGTTGTGTTCCAGGATTCTGCTGATGACTCTGTGGAAAAATTGGCTGAGAAAACTGAAGGTTTATCGGTGTCAGATGGTGTAGAAAGTTCATTTGCTGGTCTGAAAAAGAAAAAGAAGAAGCCAGTTGATACTGATACGTTATTGCATGATGATGGTGGGGATGGAGAGGAAGATCTGGATGTTGATCATGTGGTAGACGATGAAGGGGAAAGAATTACTCCAGAACCACGTCTTCCTTGGGAAGGGAGTGAGCGTGATTACGAATATGAAGAGCTTCTTGGCAGAGTTTTTAACATCCTCAAGGAGAATAATCCTGAGCTAGCTGGAGATAGGAGGAGGACAGTTATAAGGCCTCCACAAGTTCTTCGCGAAGGCACTAAAAAAACTGTTTTTGTGAATTTCATGGATCTCTGCAAAACGATGCATCGCCAGCCAGACCATGTAATGGCTTTCTTGTTGGCTGAACTGGGGACAAGTGGATCACTTGATGGACAACAGAGGTTAGTTGTCAAAGGTAGATTTGCACCCAAGAACTTTGAAGGAATTTTGCGTCGATATATTAATGAATATGTCATATGCATTGGGTGCAAAAGTCCAGACACTATACTTTCGAAGGAGAATAGGCTTTTCTTTCAAAGGTGCGAAAAGTGTGGTTCGGGACGATCGGTCGCTCCAATTAAAGCTGGTTTTGTTGCTCGTGTTGGTCGTAGAACTGCTGGAACATGA 813 42.44 MADQVLNDAKDEVTEIASFDPTKKKKKKKVVFQDSADDSVEKLAEKTEGLSVSDGVESSFAGLKKKKKKPVDTDTLLHDDGGDGEEDLDVDHVVDDEGERITPEPRLPWEGSERDYEYEELLGRVFNILKENNPELAGDRRRTVIRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICIGCKSPDTILSKENRLFFQRCEKCGSGRSVAPIKAGFVARVGRRTAGT 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53047527 53050396 + evm.model.ptg000010l.531 HCH2g0973 540198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0973 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 25 256 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
HCH2g0973 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0973 270 Gene3D - 113 255 - -
HCH2g0973 270 MobiDBLite consensus disorder prediction 60 78 - -
HCH2g0973 270 FunFam Eukaryotic translation initiation factor 2 subunit 113 255 - -
HCH2g0973 270 Pfam Domain found in IF2B/IF5 139 248 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0973 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH2g0973 270 MobiDBLite consensus disorder prediction 47 86 - -
HCH2g0973 270 SMART eIF2Bneu4 140 249 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0973 HCH-Chr2:53047527 HCH4g0940 HCH-Chr4:6027481 3.20E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0973 K03238 - gmx:100783618 420.624