Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0977 ATGCAAGATCCAGCTTCATCAAACCCCATCCATAATCCAAGTCCAAATCCAAATCCAAATGCAGCATCGGCACCGCCACCACCGCTGCCGAAAAGCCACAAACCTCCGCCGGCAGCCAATGCCACGGCGGTCTCTTCCTCCTCCGCAATGTTTGGAAATATCCTCCCAAACAGCTCATTCATACCCAGAAGTGGTTCTCTTCACAGAAGGGCTCATTCCGAAGTCAGTTTCCGGTTACCGGAAGACATGATGGATCTCTCCGGCTCCGATCCGTTTGCCGGTGGGTCTTCCACGGCTAGTATGGAAGAGATCGGATCCGAAGACGATCTGTTTTCCACATACATTGATGTAAAGAAACTCGGAGATAATGCGAATGCCGGGAGTGAGGGTGGGGGTGGTAGTGAGGGAGAGAAGAATGTTATGAAGCCGAGGCATCGTCATAGTGTTTCGGTAGATGGGACTTCTTCAAATAGTGTTTTTGGAGAGATAATGGAAGCTAAGAAAGCTATGCCTCCTGATAAATTGGCTGAGCTTTGGTCTAGTGATCCTAAGCGTGCCAAAAGAATATTGGCAAACCGGCAGTCTGCTGCTCGCTCAAAAGAGAGGAAGGCACGATATATGCAGGAATTGGAGCGCAAAGTGCAGACTCTTCAAACAGAAGCAACCACTCTGTCAGCCCAATTAACTTTGTTCCAGCGAGACACAACCGGTCTCAGTACTGAAAATACAGAGCTTAAGCTTCGATTACAGGCTATGGAGCAACAAGCTCAATTGCGTGATGCTCTCAATGAAGCACTGAAGAAGGAAGTTGAGAGGCTTAAAATTGCTACTGGGGAAATAATGAGCCCTGCTGAGTCCTATCACTTGGGCATGCATCACATGGCATACGCCCCATCTTCAAACCTCATTCCACTTCAACACCAACAAGGATCTGCAGGCCCTCAAAGCATGCAATTGCCACCATATAATAACCATTCTCCATCTAATATGTCTACACACCCGCTGCATCCATCGGATTCTCATTCACTCTCAGAAGTTCTGCAGAGTGACCCTCTTGGCCGATTACAGGGTCTCGACATCAGTAGTAGAGGATCATCCCTTGTGAAATCTGAGGGCCCCTCACTTTCTGCAAGTGAGAGTAGTACAACCTTTTGA 1155 48.23 MQDPASSNPIHNPSPNPNPNAASAPPPPLPKSHKPPPAANATAVSSSSAMFGNILPNSSFIPRSGSLHRRAHSEVSFRLPEDMMDLSGSDPFAGGSSTASMEEIGSEDDLFSTYIDVKKLGDNANAGSEGGGGSEGEKNVMKPRHRHSVSVDGTSSNSVFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYMQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEIMSPAESYHLGMHHMAYAPSSNLIPLQHQQGSAGPQSMQLPPYNNHSPSNMSTHPLHPSDSHSLSEVLQSDPLGRLQGLDISSRGSSLVKSEGPSLSASESSTTF 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53076680 53079894 + evm.model.ptg000010l.527 HCH2g0977 540202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0977 384 MobiDBLite consensus disorder prediction 304 384 - -
HCH2g0977 384 MobiDBLite consensus disorder prediction 359 384 - -
HCH2g0977 384 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 182 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0977 384 SMART brlzneu 180 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0977 384 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 33 333 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH2g0977 384 MobiDBLite consensus disorder prediction 10 35 - -
HCH2g0977 384 Coils Coil 200 227 - -
HCH2g0977 384 FunFam probable transcription factor PosF21 183 236 - -
HCH2g0977 384 Coils Coil 248 279 - -
HCH2g0977 384 SUPERFAMILY Leucine zipper domain 184 235 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0977 384 CDD bZIP_plant_RF2 185 234 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH2g0977 384 MobiDBLite consensus disorder prediction 124 156 - -
HCH2g0977 384 MobiDBLite consensus disorder prediction 304 349 - -
HCH2g0977 384 MobiDBLite consensus disorder prediction 1 46 - -
HCH2g0977 384 Gene3D - 183 236 - -
HCH2g0977 384 Pfam bZIP transcription factor 184 232 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0287 HCH-Chr1:45381096 HCH2g0977 HCH-Chr2:53076680 1.50E-70 dispersed
HCH2g0977 HCH-Chr2:53076680 HCH7g0514 HCH-Chr7:3901214 1.70E-27 dispersed
HCH2g0977 HCH-Chr2:53076680 HCH12g1439 HCH-Chr12:38690895 3.90E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33215 PF00170 bZIP_1 2.70E-08 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0977 - - - 0.0