Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0980 ATGTTGAAGAATAATATTCAAGCAGGAAAACCAAGCAACCTTCATGATTTCAACTCCGACTTTAGATACGCTGAAACCGATCCGACATGTCGTTACGGCCGCTTTGAAGAAGTTCTAGGCAAAGGGGCCATGAAAACAGTATACAAAGCAATTGATGAATTTCTAGGAATGGAGGTGGCATGGAGCCAAGTGAAACTAAACGAAGTCCTCCGATCGCCGGACGATTTGCAGCGGCTGTATTCGGAGGTTCATCTACTTAGCACACTCAAGCACGAATCGATCATGCGATTCTACACGTCTTGGATCGATGTCGATCGCAAGACGTTCAACTTCATTACCGAAATGTTTACTTCAGGAACACTTAGAGAATATGGAAAGAAATATAGGCGAGTTAACATGAGAGCTATTAAGAATTGGGCACGGCAGATTTTGAAGGGCCTCGTTTATTTGCATGAACATGATCCTCCAATAATACACAGAGACTTGAAATGTGATAATCTCTTTGTAAATGGTCATCTTGGGCAAGTCAAGATTGGTGATTTGGGGCTTGCAGCTATACTTCATGGTTCCAAATCTGCTCATAGTGTTATAGGTACACCGGAGTTCATGGCGCCGGAGTTATACGAGGAGGACTACAATGAGCTAGTTGATGTCTATTCATTTGGTTTGTGTGTTATGGAGATGCTTACTTCTGAATATCCATATAGCGAGTGTTCTAATCCTGCTCAGATATACAAGAAAGTCACATCAGGGAAGCTGCCAGCAGCATTGTACAAGATTCAAGACCTGGATGCACAGAGATTTATAAAGAAATGCTTGGTACCGGTTTCGATGAGAGCATCGGCAAAGGAACTATTACAAGATCCTTTCCTCATGGTTGATGGAGACAGACGTAATAATTTACCAAAGGAGAAGAATCAAGAGCAGAAGCCATTTCTAAATGCCAAAGAAATGGAGAAATTGCATCTGAATGAAGGTTTAAACAGGACCAATATGACAATCACAGGAAAACTGAATCCAGAAGATGATACCCTCTTTCTCAGAGTTCAAACTGCAGATAAAGAAGGTCCTCTGAGGAATATATACTTCCCCTTTGATATAGTGAATGATACTGCAATAGATGTGGCAATGGAGATGGTGAAAGAATTGGAAATTACTGATTGGGAGCCATTTGAAATAGCAGACATGATTGAAGGAGAGATATCTGCTTTGGTTCCAAATTGGAATAAAACACATGATCAGTCATCAAATCATCCCTTCAGCTTCAGCTATGCAGAAGAAGAAGATGACGATGAGAGGTCTCATCATACCTTCCGCTCTGTCTCCTCGTCTTCACAAGCTACGACATTAGGTTTCGTCGCCTCCCCACGGACAACTAATCAAAAGATATCAGATTGCTATAGTTGGTTCCAAGATGATGTGCATGATGACAGCAGTTCACAGAGCTCATCGCCATCCGGAAAATATTCAAACATGAATTACATAAGCAGTGACGAGTACGAGGCTCCGGTCCGAATAGATCAACATAACATCACCAAGATTCACAACTCCACAAGGTTTTGTCCCAATGAAAACCAAAACAGTAAGGATTTCTTGGCGGGAACTTTATATAAGCAAATTAGAGCTATGGAAGGATCATGTCAGGGAAATGGTTCTAGTCGTAAAGACAAGAGGGTAATGGATGGTCGGAGATTAACGAGGAATAGATCATTGGTTGATGTACACAGCCAACTATTGCACCGGTCATTGGTGGAGGAAGTGAGTAGAAGACGGTTGTTCAAGACGGTCGGAGCGGTGGAGAACATTGGTTTTCAAGCACCCTGTGACGTTTCTTCCGGCAGAAGAGTTTCTGACCGGGAGTTGGTCGGAAAACGAGGTGGTGGTGATGTGGGAATCAGGAGAAATCATGATTTGTAG 1917 42.41 MLKNNIQAGKPSNLHDFNSDFRYAETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGMEVAWSQVKLNEVLRSPDDLQRLYSEVHLLSTLKHESIMRFYTSWIDVDRKTFNFITEMFTSGTLREYGKKYRRVNMRAIKNWARQILKGLVYLHEHDPPIIHRDLKCDNLFVNGHLGQVKIGDLGLAAILHGSKSAHSVIGTPEFMAPELYEEDYNELVDVYSFGLCVMEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDLDAQRFIKKCLVPVSMRASAKELLQDPFLMVDGDRRNNLPKEKNQEQKPFLNAKEMEKLHLNEGLNRTNMTITGKLNPEDDTLFLRVQTADKEGPLRNIYFPFDIVNDTAIDVAMEMVKELEITDWEPFEIADMIEGEISALVPNWNKTHDQSSNHPFSFSYAEEEDDDERSHHTFRSVSSSSQATTLGFVASPRTTNQKISDCYSWFQDDVHDDSSSQSSSPSGKYSNMNYISSDEYEAPVRIDQHNITKIHNSTRFCPNENQNSKDFLAGTLYKQIRAMEGSCQGNGSSRKDKRVMDGRRLTRNRSLVDVHSQLLHRSLVEEVSRRRLFKTVGAVENIGFQAPCDVSSGRRVSDRELVGKRGGGDVGIRRNHDL 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53101309 53104606 + evm.model.ptg000010l.524 HCH2g0980 540205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0980 638 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
HCH2g0980 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0980 638 MobiDBLite consensus disorder prediction 413 442 - -
HCH2g0980 638 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
HCH2g0980 638 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
HCH2g0980 638 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0980 638 SUPERFAMILY Protein kinase-like (PK-like) 35 292 IPR011009 -
HCH2g0980 638 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 604 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH2g0980 638 FunFam probable serine/threonine-protein kinase WNK9 116 296 - -
HCH2g0980 638 CDD STKc_WNK 31 291 - -
HCH2g0980 638 Pfam Protein kinase domain 36 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0980 638 SMART serkin_6 33 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0980 HCH-Chr2:53101309 HCH9g0831 HCH-Chr9:5873604 2.00E-169 dispersed
HCH2g0980 HCH-Chr2:53101309 HCH10g0772 HCH-Chr10:7501607 3.30E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81335 PF00069 Pkinase 6.30E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0980 K08867 - csv:101203757 999.964