Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0983 ATGCCAGAGATCGAACAATACCCTTCTGATAATAATGCCTTGTTTGGCAGATACGAAATCGGAAAACTCCTCGGCTGCGGCGCCTTCGCTAAAGTCTACCATGCACGTGATCTCCGCTCCGGTCAAAGCGTCGCCGTTAAAATCATCAACAAGAAGAAGATCAACGGCACTTCCTTGATGTCTAATATCAAACGTGAGATCTCCATCATGCGCCGCTTGCGTCATCCGAACATCGTTAAACTCCACGAAGTCCTCGCCACCAAAACCAAGATTTATTTCGTCATGGAATTCGTCAAAGGCGGCGAGCTCTTCGCCAAGATCGCGAAAGGCAGGTTCAGCGAGGATCTGAGCCGTAGGTTTTTCCAGCAGCTCATATCCGCCGTTGGTTACTGTCACGCGCGTGGGATTTTCCACCGCGATTTGAAGCCGGAGAATCTCCTCGTCGACGAGAATGGGAATTTGAAAGTGTCGGATTTCGGTCTCAGCGCCGTGACGGATCAGATCCGACCCGACGGGCTTTTACACACTCTTTGTGGGACCCCTGCTTACGTGGCACCGGAGATTCTGTCGAAGAAAGGTTATGACGGCGTGAAGATCGACGTCTGGTCGTGTGGTGTGATTCTGTTTGTTTTAAACGCCGGTTACCTTCCGTTTAACGACCCGAATCTCATGGCGATGTATAGGAAGATTTATAAAGGGGAATACCGGTGCCCGAAATGGATGTCTTCGGATCTTAAAAGGTTTTTATCTCGGGTTTTCGACACGAATCCCGATACGAGAATTACGTTGGACGAGATTTTGAATGATCCGTGGTTTAAAAAAGGTGGTGGGTATAAGGAGGTAAATTTTTATTACAATGATATCAAGGATGAGGAGAAGGAGAAGAATGAATGTGATGATATCAATAAAGGGGGGAATTTGAATGCTTTCGATATCATATCGTTTTCGTCGGGTTTGGATTTATCGGGTTTGTTCGATAATAATTCATTGAATAACAACGAGAGATTCGTCGTGAATGAGGTGGCGGAGAAGGTAGTGAAGAAAGTAGAGGAATTTGGTAAAGTTGAGAATTTGAAGGTAAAAAAAAGTAAAGAATGGGGGGTTGAATTGGAAGGGCAGAATGGTAATTTTGTAATTGGGGTTGAAGTGTTCCAATTGGCGGAACGATTGGTGATGGTGGAGACTAGGAGAAAAATCGGAGATGGAGATGGAGATGGAGATGGGTATAAGGAGATACTGAGAAAGTTGAGGGATTATCTGAGTGGTGGCGGGGATGAGGCGTCGAGTTCTCGGGGGGATTCCGGTGACCAGAATCCGTGA 1320 46.44 MPEIEQYPSDNNALFGRYEIGKLLGCGAFAKVYHARDLRSGQSVAVKIINKKKINGTSLMSNIKREISIMRRLRHPNIVKLHEVLATKTKIYFVMEFVKGGELFAKIAKGRFSEDLSRRFFQQLISAVGYCHARGIFHRDLKPENLLVDENGNLKVSDFGLSAVTDQIRPDGLLHTLCGTPAYVAPEILSKKGYDGVKIDVWSCGVILFVLNAGYLPFNDPNLMAMYRKIYKGEYRCPKWMSSDLKRFLSRVFDTNPDTRITLDEILNDPWFKKGGGYKEVNFYYNDIKDEEKEKNECDDINKGGNLNAFDIISFSSGLDLSGLFDNNSLNNNERFVVNEVAEKVVKKVEEFGKVENLKVKKSKEWGVELEGQNGNFVIGVEVFQLAERLVMVETRRKIGDGDGDGDGYKEILRKLRDYLSGGGDEASSSRGDSGDQNP 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53113937 53115256 - evm.model.ptg000010l.521 HCH2g0983 540208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0983 439 SUPERFAMILY Protein kinase-like (PK-like) 15 277 IPR011009 -
HCH2g0983 439 FunFam Non-specific serine/threonine protein kinase 9 97 - -
HCH2g0983 439 FunFam Non-specific serine/threonine protein kinase 9 303 - -
HCH2g0983 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0983 439 CDD CIPK_C 308 418 - -
HCH2g0983 439 Gene3D Kinase associated domain 1, KA1 309 421 - -
HCH2g0983 439 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0983 439 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0983 439 Gene3D Transferase(Phosphotransferase) domain 1 9 308 - -
HCH2g0983 439 Pfam NAF domain 306 362 IPR004041 GO:0007165(InterPro)
HCH2g0983 439 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
HCH2g0983 439 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0983 439 MobiDBLite consensus disorder prediction 420 439 - -
HCH2g0983 439 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
HCH2g0983 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 402 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0983 HCH-Chr2:53113937 HCH9g0827 HCH-Chr9:5800530 4.60E-141 dispersed
HCH2g0983 HCH-Chr2:53113937 HCH2g0984 HCH-Chr2:53126364 6.10E-101 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81336 PF00069 Pkinase 2.70E-72 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0983 - - - 0.0