Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0984 ATGTCTGATCGTTCATCGAAACTACGACGAAACATATGCATCGGCGTATCGATCACCGTTATAGGACTAGTAATTCTAGCCCTAATCCTAGCCTTCACAGTATTCAAACCGAAACCGGCCGTCATCGCCGTGAATTCAATCGATCTACTTGACCTAAACGTCTCCCTCGACATGCCGAAGCTCGGCGTTGATCTCAACATAACCCTATCTGTCAAACTCTCCGTTAAAAACCCTAACAAAGCGGATTTCAAATACAATGATGGCATTGCTGTGGTGAGTTATAGAGGAGTATTGGTAGGGGAGGCGCCAATTCCTGCCGGCGAGATATCTGCGGATCAGACAAAGCGTATGAATATTACACTCACGATTATGGCGGGAAAATTGGTTGGTGTGTCGGGGCTTTTCTCGGACGTGGTTTCCGGTGAATTATCCATGAATAGTTTTACTAGGGTTTCTGGTAAAGCCACCGTATTATTTGGTGTTTTTAAGGGAGGTGAACGCTTCCCTCACCCAAAATCATCACCAAAACGATCGCAATTTCAGATCTTTCTGCTGAAGGATCTTAAAACTACTGTGATTGGGATGGAAAATAAGTCGAGTGTGTTGATGCAGAGATATGAATTAGGTAGATTACTTGGCCAAGGAACCTTTGCAAAGGTATATTATGCGAGGAATACGAGAACTAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGGTTTTGAAGGTTGGGCTTATTAATCAGATCAAACGCGAAATTTCTATTATGAGACTAGTTAGACACCCTAATATTATACATCTTTATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTCTTGGAATATGCTAAAGGCGGTGAGCTCTTTGACAAGGTTTCTAAGGGAAAGTTGAAGGAGGATGTTGCTTGGAAATACTTTCATCAGCTAATCAACGCTGTTGATTTCTGTCATAGTAGGGATGTATATCACCGTGATATAAAGCCCGAGAACCTACTGCTTGATGAGAATGAGAACCTCAAGGTTTCTGATTTTGGCTTAAGTGCCCTAGCTGAGTCCAGGCGTCAAGATGGCTTGCTCCATACTACTTGTGGTACTCCGGCTTATGTTGCACCTGAAGTCATCAATAGGAAAGGCTATGATGGTTATCTCCCGTTTCATGATTCGAATTTGATGGAGATGTATAGAAAGATTGGAAAAGCAGAGTATAAATGTCCTAGTTGGTTCCCCCGTGATGTGCGGAGGCTGCTAAGCAGGATGCTTGATCCAAACCCCAATAAAAGGACTTCAATAGCAATGATAAAAGATAGTTCTTGGTTCAGAAAAGGGTTAAGGTTTAAGAATATTAAAAGTCGAACGGAAAGCAGTGGTACAGCTACTGAAGATGCTGCTGTGTCTGGATCATCCGAGAGTGGTGCTACTGCGGAGGAAAATCAGGCACCAGATAGACCTCCGACTTTGAATGCGTTTGACATCATCTCCCTCTCTGCGGGATTTGATCTATCCAGTTTATTTGAAGACAGTTTAATGAAGAGAGAAACATTGTTTACTTGTAGACAACCAGCCTCTACCATTCTCTCTAAGCTGGATGAAATTGCTAAACGTCTGAGATTCCGAGTGCAGAAGAAGGAACCAGGTCTTCTGAAGTTAGAGGCAATGAAAGAGGGTAAAAAAGGGCCAGTGTCCATTGATACAGAGATCTTTGAGGTCACTCCATCTTTTTATTTAGTGGAGATGAAAAAATCAAATGGAGATACATTGGAATATCAGAAGTTATTAAAAGACGATATAAGGCCTGCTCTACAGGATATCGTATGGGTTTGGCAACGCGAGCAGGAGCAACAACCGCAGCCTCAGTTTCTTCAACAGCAAACGGAACAATCGGATTCACCACAACAGCCGCTGCATTACCAAGAACCGCCACATGAAAACCTGGCTCGGCAAGGATCCTAA 1959 42.78 MSDRSSKLRRNICIGVSITVIGLVILALILAFTVFKPKPAVIAVNSIDLLDLNVSLDMPKLGVDLNITLSVKLSVKNPNKADFKYNDGIAVVSYRGVLVGEAPIPAGEISADQTKRMNITLTIMAGKLVGVSGLFSDVVSGELSMNSFTRVSGKATVLFGVFKGGERFPHPKSSPKRSQFQIFLLKDLKTTVIGMENKSSVLMQRYELGRLLGQGTFAKVYYARNTRTNQSVAIKVIDKEKVLKVGLINQIKREISIMRLVRHPNIIHLYEVMATKTKIYFVLEYAKGGELFDKVSKGKLKEDVAWKYFHQLINAVDFCHSRDVYHRDIKPENLLLDENENLKVSDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINRKGYDGYLPFHDSNLMEMYRKIGKAEYKCPSWFPRDVRRLLSRMLDPNPNKRTSIAMIKDSSWFRKGLRFKNIKSRTESSGTATEDAAVSGSSESGATAEENQAPDRPPTLNAFDIISLSAGFDLSSLFEDSLMKRETLFTCRQPASTILSKLDEIAKRLRFRVQKKEPGLLKLEAMKEGKKGPVSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKLLKDDIRPALQDIVWVWQREQEQQPQPQFLQQQTEQSDSPQQPLHYQEPPHENLARQGS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53126364 53131617 - evm.model.ptg000010l.520 HCH2g0984 540209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0984 652 MobiDBLite consensus disorder prediction 617 652 - -
HCH2g0984 652 ProSiteProfiles NAF domain profile. 484 508 IPR018451 GO:0007165(InterPro)
HCH2g0984 652 Gene3D Transferase(Phosphotransferase) domain 1 196 487 - -
HCH2g0984 652 FunFam Non-specific serine/threonine protein kinase 197 285 - -
HCH2g0984 652 Gene3D Kinase associated domain 1, KA1 488 609 - -
HCH2g0984 652 ProSitePatterns Protein kinases ATP-binding region signature. 212 235 IPR017441 GO:0005524(InterPro)
HCH2g0984 652 Pfam Protein kinase domain 206 383 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0984 652 FunFam Non-specific serine/threonine protein kinase 484 608 - -
HCH2g0984 652 MobiDBLite consensus disorder prediction 453 487 - -
HCH2g0984 652 FunFam Maternal embryonic leucine zipper kinase 196 468 - -
HCH2g0984 652 Gene3D - 30 170 - -
HCH2g0984 652 SMART serkin_6 206 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0984 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH2g0984 652 MobiDBLite consensus disorder prediction 453 478 - -
HCH2g0984 652 MobiDBLite consensus disorder prediction 617 639 - -
HCH2g0984 652 ProSiteProfiles Protein kinase domain profile. 206 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH2g0984 652 SUPERFAMILY Protein kinase-like (PK-like) 202 443 IPR011009 -
HCH2g0984 652 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 195 597 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH2g0984 652 SUPERFAMILY LEA14-like 65 130 - -
HCH2g0984 652 Pfam NAF domain 486 544 IPR004041 GO:0007165(InterPro)
HCH2g0984 652 CDD CIPK_C 490 604 - -
HCH2g0984 652 Pfam Late embryogenesis abundant protein 72 168 IPR004864 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0984 HCH-Chr2:53126364 HCH9g0825 HCH-Chr9:5774557 4.40E-156 dispersed
HCH2g0983 HCH-Chr2:53113937 HCH2g0984 HCH-Chr2:53126364 6.10E-101 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81337 PF00069 Pkinase 4.20E-56 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0984 - - - 0.0