Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0985 ATGGTCACCACACTTCTCTTTTCCTTACCTAAATTTCCATTTAATTTTTACTTCCAAAGCAAACAAATGGCGATCACTTCTTCCTTATCTCTAAACAAAATGCTCACTTTAGCTTTAGCTTTTGCCCTACTCTGCATGGGGAGCTCTTCAGCTCAGCTCTCCGTCACCTTCTACTCCAAAACCTGCCCCAAGCTCCTCACCACCGTCCGATCCGGCGTTCAATCTGCCATCTCTAAAGAAGCTCGTATCGGTGCTTCTCTTCTTCGTCTCCATTTTCACGACTGCTTCGTTAACGGTTGCGATGGGTCGGTTCTTTTGGCGGACACTCCGACATTCAGAGGAGAACAAACGGCACCTCCAAACAATAGGTCGCTGAGGGGGTTTAATGTAATTGAAGATATTAAGGAAGATGTGGAGAAAATTTGTCCTGGTGTCGTCTCTTGTGCTGATATATTAACTCTTACTGCTCGCGACTCTACTGCTATTCTTGGAGGACCAAGCTGGGAGGTTAAACTTGGAAGAAGGGATTCGAAATCAGCCAGCTTCTCCGCCGCCAGCAGTGGAGTCATCCCACCTCCGACATCAACCCTCAACAACCTCATCAATAGATTTAGTGCCCAAGGTCTCTCCACCAAGGACATGGTTGCCTTGTCTGGGGCCCATACAATTGGTCAAGCAAGGTGCGCAACTTTTAGAAACCGTATATACAATGAGAGCAATATAGACTCATCTTTCGCCAGAGAAAGACAAAGAAACTGTCCCAGAAATGGAGGAGACGATAATCTTGCCCCTCTTGATCTTCAAACTCCGAGGCGCTTCGACAACTTCTACTACAAGAACCTTCTAAGCCAGAAGGGTTTGCTCCATTCCGACCAGATACTGCACAACGGCGGATCCACTGATTCCTTGGTCGAACGCTACAGTAAAGACGATGGGGCTTTCGATTCCGATTTCGTGGCCGCCATGATTAGGATGGGAGATATTCAACCGCTGACGGGATCGCAGGGCGAGATTAGGAAGGTCTGCAGCAAACCTAACTGA 1041 47.65 MVTTLLFSLPKFPFNFYFQSKQMAITSSLSLNKMLTLALAFALLCMGSSSAQLSVTFYSKTCPKLLTTVRSGVQSAISKEARIGASLLRLHFHDCFVNGCDGSVLLADTPTFRGEQTAPPNNRSLRGFNVIEDIKEDVEKICPGVVSCADILTLTARDSTAILGGPSWEVKLGRRDSKSASFSAASSGVIPPPTSTLNNLINRFSAQGLSTKDMVALSGAHTIGQARCATFRNRIYNESNIDSSFARERQRNCPRNGGDDNLAPLDLQTPRRFDNFYYKNLLSQKGLLHSDQILHNGGSTDSLVERYSKDDGAFDSDFVAAMIRMGDIQPLTGSQGEIRKVCSKPN 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53144907 53147136 - evm.model.ptg000010l.519 HCH2g0985 540210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0985 346 ProSitePatterns Peroxidases active site signature. 84 95 IPR019794 GO:0004601(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 145 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 212 224 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 164 179 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 280 297 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 320 333 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 126 139 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 264 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 62 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Plant peroxidase signature 86 106 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Haem peroxidase superfamily signature 84 98 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Haem peroxidase superfamily signature 146 163 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Haem peroxidase superfamily signature 164 176 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Haem peroxidase superfamily signature 266 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 PRINTS Haem peroxidase superfamily signature 213 228 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 Gene3D Peroxidase, domain 2 191 325 - -
HCH2g0985 346 CDD secretory_peroxidase 52 344 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g0985 346 FunFam Peroxidase 56 199 - -
HCH2g0985 346 SUPERFAMILY Heme-dependent peroxidases 52 346 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 213 223 IPR019793 -
HCH2g0985 346 PANTHER PEROXIDASE 72-RELATED 41 344 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 Gene3D - 56 343 - -
HCH2g0985 346 Pfam Peroxidase 69 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 ProSiteProfiles Plant heme peroxidase family profile. 52 346 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0985 346 FunFam Peroxidase 191 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0582 HCH-Chr13:4450166 HCH2g0985 HCH-Chr2:53144907 8.10E-111 dispersed
HCH13g0583 HCH-Chr13:4460824 HCH2g0985 HCH-Chr2:53144907 1.50E-104 dispersed
HCH1g0132 HCH-Chr1:9900540 HCH2g0985 HCH-Chr2:53144907 4.40E-101 dispersed
HCH2g0985 HCH-Chr2:53144907 HCH3g1496 HCH-Chr3:52981851 9.90E-123 dispersed
HCH2g0985 HCH-Chr2:53144907 HCH2g0986 HCH-Chr2:53153067 5.10E-143 tandem
HCH2g0985 HCH-Chr2:53144907 HCH3g1495 HCH-Chr3:52974922 8.80E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0985 K00430 - csv:101207371 506.138