Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0986 ATGGCTATTTCCTCTTTCAAAATAGGTTTTCTAGCATTAGCTTTAGTAGCAGCAGCATTGGTGGGGAGCTCTTCAGCTGATCATGAACTCTCCCCTAACTTTTACTACAAGAGCTGCCCCAAGCTCCTTAGCACAGTGAGCGCAGGCGTCCGATCCGCGATCGCTAAGGAAGCCCGCATGGGCGCTTCTCTTCTCCGCCTACACTTTCACGACTGCTTCGTTAACGGTTGTGATGGATCAATTCTTTTGGAAGATACTCCAACATTTAGAGGTGAACAAACAGCAGGACCCAACAACAGATCCGTCAGAGGATTCAATGTGATTGAGGATATAAAGACAAAGGTGGAAAAAATTTGTCCTGGTGTTGTCTCATGTGCTGATATAGTAACTCTCACGGCTCGTGACTCAGTTGTAACTCTTGGAGGGCCAAGTTGGAAGGTTAAATTAGGAAGAAGGGATTCAAAAACAGCAAGCTTCTCCGCCGCAAACAGTGGTGCAATCCCTCCTCCCACATCCACTCTTGACAACCTTATCAACAGATTTAATGACAAAGGCCTCTCTGCTCGTGACATGGTTGCCTTGTCTGGGGCACATACAATTGGGCAAGCAAAGTGCTTATTTTTCAAGAACCGTATATACAACGAGAGCAACATAGACCCATCATTTGCCAAGGAAAGACAAAGAAACTGTCCCACAAATGGAGGAGATGACAATCTCTCCCCTCTCGATCTTCAAACTCCAAAGCTTTTCGACAACTACTACTACAAGAACCTTTTGAAGAAGAAGGGTTTGCTCCGGTCCGATCAAGTACTGCACAACGGCGGATCCACCGATTCTTTGGTCGAACTTTACAGCGACGACGACGACAGCTTTGAAGATGATTTTGTGGCAGCCATGATTAAGATGGGAGATATTCAACCACTCACTGGATCACAGGGTGAGATTAGGAAGGTCTGCAGCAGACCTAACTAA 972 46.09 MAISSFKIGFLALALVAAALVGSSSADHELSPNFYYKSCPKLLSTVSAGVRSAIAKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFRGEQTAGPNNRSVRGFNVIEDIKTKVEKICPGVVSCADIVTLTARDSVVTLGGPSWKVKLGRRDSKTASFSAANSGAIPPPTSTLDNLINRFNDKGLSARDMVALSGAHTIGQAKCLFFKNRIYNESNIDPSFAKERQRNCPTNGGDDNLSPLDLQTPKLFDNYYYKNLLKKKGLLRSDQVLHNGGSTDSLVELYSDDDDSFEDDFVAAMIKMGDIQPLTGSQGEIRKVCSRPN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53153067 53154951 - evm.model.ptg000010l.518 HCH2g0986 540211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0986 323 Gene3D Peroxidase, domain 2 168 302 - -
HCH2g0986 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
HCH2g0986 323 SUPERFAMILY Heme-dependent peroxidases 29 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 ProSiteProfiles Plant heme peroxidase family profile. 29 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 FunFam Peroxidase 168 302 - -
HCH2g0986 323 CDD secretory_peroxidase 29 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH2g0986 323 PANTHER PEROXIDASE 72-RELATED 15 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 ProSitePatterns Peroxidases active site signature. 61 72 IPR019794 GO:0004601(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 39 58 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 63 83 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Haem peroxidase superfamily signature 61 75 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0986 323 Gene3D - 33 320 - -
HCH2g0986 323 FunFam Peroxidase 33 176 - -
HCH2g0986 323 Pfam Peroxidase 47 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0123 HCH-Chr1:9087891 HCH2g0986 HCH-Chr2:53153067 7.00E-102 dispersed
HCH2g0986 HCH-Chr2:53153067 HCH3g1496 HCH-Chr3:52981851 2.40E-115 dispersed
HCH2g0986 HCH-Chr2:53153067 HCH2g0988 HCH-Chr2:53162068 1.10E-80 proximal
HCH2g0985 HCH-Chr2:53144907 HCH2g0986 HCH-Chr2:53153067 5.10E-143 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0986 K00430 - csv:101204245 508.834