Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0988 ATGGCTTCTCTTCGCTCTCTTTTGCTTTTTATTACTCTTTTCATAGCTTTGTTGAGCCCTAGCTACGCAAATCTTAATCAATACTACTATGATAAAGTTTGCCCCAAGGCTTTGTCCACCATCAGATCCGTCGTCAAAAAGGCGATCTTACGTGAGCCTCGCATGGGAGCTTCACTTTTACGCCTTCATTTCCATGATTGTTTTGTTAACGGCTGCGATGGGTCGGTTTTGTTGGATGATATAGGCAACTTTGTTGGAGAAAAGACAGCCTTACCCAACATTAATTCAATCAGAGGACTTGATGTGGTTGACAAAATTAAAACTGAAGTTAACAAAGTTTGCAAAGCTAACGTGGTCTCTTGTGCTGATATCTTGGCTGTTGCGGCTCGTGACTCGGTTGGCCTTCTTGGAGGGCCTGATTACAAAATTCCGTTGGGAAGAAGAGATGCAAGAACAGCAAACCGTAATGATGCGAACAGCAATCTTCCAGCACCATTTTTCAATTTCCCGCAGCTCCTTTCAAGCTTCCAAGCTCAAGGTCTATCCCTTAGAGATCTCGTCCTTCTCTCCTCCGGCGCCCACACCTTTGGCTTCTCTCGTTGCACTAATTTCAGGAACAGAATTTTTAATGACACCAACATCGACCAGAAATTTGCAGCAGCTTTACGTAAGAAATGTCCAAAGACTGGTGGAGATAATAATCTTCAATCTTTTGATTCAACTCCAAGTTCCTTTGATACAAATTACTTCAAGGCTTTGACCCAACAAAAGGGGCTTCTCCATTCGGATCAAGAGCTGTTTAAAGGTGATGGGAGTGAGAGTGAACAACTGGTGAAATTCTATATCAGAGACCCTTATGCCTTTAGCCGTGATTTTGGCTCCTCCATGATTTCCATGGGAAATTTGAAGCCGCTTACTGGAAACAAAGGAGAAATCAGGAAGAATTGCAGGTTTATCAACTGA 963 42.78 MASLRSLLLFITLFIALLSPSYANLNQYYYDKVCPKALSTIRSVVKKAILREPRMGASLLRLHFHDCFVNGCDGSVLLDDIGNFVGEKTALPNINSIRGLDVVDKIKTEVNKVCKANVVSCADILAVAARDSVGLLGGPDYKIPLGRRDARTANRNDANSNLPAPFFNFPQLLSSFQAQGLSLRDLVLLSSGAHTFGFSRCTNFRNRIFNDTNIDQKFAAALRKKCPKTGGDNNLQSFDSTPSSFDTNYFKALTQQKGLLHSDQELFKGDGSESEQLVKFYIRDPYAFSRDFGSSMISMGNLKPLTGNKGEIRKNCRFIN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53162068 53163315 + evm.model.ptg000010l.516 HCH2g0988 540213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0988 320 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 FunFam Peroxidase 28 167 - -
HCH2g0988 320 Gene3D - 29 320 - -
HCH2g0988 320 SUPERFAMILY Heme-dependent peroxidases 25 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PANTHER PEROXIDASE 72-RELATED 10 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
HCH2g0988 320 FunFam Peroxidase 163 299 - -
HCH2g0988 320 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 ProSiteProfiles Plant heme peroxidase family profile. 24 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH2g0988 320 Gene3D Peroxidase, domain 2 163 299 - -
HCH2g0988 320 CDD secretory_peroxidase 24 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0988 HCH-Chr2:53162068 HCH7g0118 HCH-Chr7:769221 3.50E-90 dispersed
HCH2g0986 HCH-Chr2:53153067 HCH2g0988 HCH-Chr2:53162068 1.10E-80 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0988 K00430 - csv:101204979 439.113