Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0996 ATGGCGACTGAGGCAACAGAAGCCACGACAAAGTTTCAAAATCCGGACTTTCGACCGGTCGAAATTGTCTTGGCGGCCCATGATGGCCTCCGCTTCTGGGAATTCATGATTGCCGGTTCAATCGCCGGTTCTGTGGAACATATGGCTATGTTCCCTGTGGATACTGTTAAAACCCAAATGCAAGCTCTTGTTTCTTGTCCGATTAAATCTGTCGGGGTTAGACAAGCCCTCCGGTCGATTTTGAAGTCCGAGGGACCGGCTGGCCTTTATCGCGGTATTGGTGCGATGGGTCTTGGAGCTGGACCTGCCCATGCTGTTTATTTTACAGTTTATGAGAATTGTAAGAAGTATTTCTCTAATGGGAATCCTAATAATTCAGCCGCCCATGCTGTTTCTGGCGTTTGCGCTACCGTTGCGAGCGATGCAGTATTTACACCGATGGATATGGTTAAGCAGAGGTTGCAGCTGAGCAATAGTCCTTATAGGGGAGTTTGGGATTGTGTCAAAAGGGTTCTAAGAGATGAGGGTTTTGGAGCATTTTATGCATCCTATAGAACTACAGTGTTGATGAATGCACCGTTTACTGCTGTGCATTTTGCCACATATGAGGCTGCTAAGAGGGGTTTGATGGAGGTTTCGCCGGAGAGTGTCAATGATGAACAGTGGATTGTTCACGCCACAGCGGGGGCTGCTGCCGGAGCATCAGCAGCGTTTATTACAACGCCGTTTGATGTTGTTAAGACTCAATTACAATGTCAGGGTGTTTGTGGATGCGATAGATTCAAAAGCGGTTCAATCGGGGATGTCATCCAAACAATATTGAAGAAGGATGGATATAGAGGGCTCATGAGGGGTTGGATCCCGAGGATGCTTTTTCATGCTCCCGCTGCGGCTATCTGCTGGTCAACGTATGAAGGGTTAAAATCCTTCTTCCAAGAACTGAACGGAAGCAGTGGGGAAGTGACCTAA 969 47.78 MATEATEATTKFQNPDFRPVEIVLAAHDGLRFWEFMIAGSIAGSVEHMAMFPVDTVKTQMQALVSCPIKSVGVRQALRSILKSEGPAGLYRGIGAMGLGAGPAHAVYFTVYENCKKYFSNGNPNNSAAHAVSGVCATVASDAVFTPMDMVKQRLQLSNSPYRGVWDCVKRVLRDEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAAFITTPFDVVKTQLQCQGVCGCDRFKSGSIGDVIQTILKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEGLKSFFQELNGSSGEVT 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53235588 53238342 - evm.model.ptg000010l.508 HCH2g0996 540221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0996 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
HCH2g0996 322 Gene3D Mitochondrial carrier domain 160 322 IPR023395 -
HCH2g0996 322 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085(InterPro)
HCH2g0996 322 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085(InterPro)
HCH2g0996 322 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085(InterPro)
HCH2g0996 322 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085(InterPro)
HCH2g0996 322 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085(InterPro)
HCH2g0996 322 Gene3D Mitochondrial carrier domain 8 159 IPR023395 -
HCH2g0996 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
HCH2g0996 322 PANTHER MITOFERRIN-1-RELATED 24 313 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
HCH2g0996 322 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
HCH2g0996 322 FunFam Mitochondrial substrate carrier family protein 16 212 - -
HCH2g0996 322 Pfam Mitochondrial carrier protein 220 313 IPR018108 -
HCH2g0996 322 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
HCH2g0996 322 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
HCH2g0996 322 SUPERFAMILY Mitochondrial carrier 28 306 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0996 HCH-Chr2:53235588 HCH9g0795 HCH-Chr9:5508358 3.90E-129 dispersed
HCH2g0996 HCH-Chr2:53235588 HCH13g0668 HCH-Chr13:5330930 8.60E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0996 K15113 - csv:101215924 579.326