Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH2g0996 | ATGGCGACTGAGGCAACAGAAGCCACGACAAAGTTTCAAAATCCGGACTTTCGACCGGTCGAAATTGTCTTGGCGGCCCATGATGGCCTCCGCTTCTGGGAATTCATGATTGCCGGTTCAATCGCCGGTTCTGTGGAACATATGGCTATGTTCCCTGTGGATACTGTTAAAACCCAAATGCAAGCTCTTGTTTCTTGTCCGATTAAATCTGTCGGGGTTAGACAAGCCCTCCGGTCGATTTTGAAGTCCGAGGGACCGGCTGGCCTTTATCGCGGTATTGGTGCGATGGGTCTTGGAGCTGGACCTGCCCATGCTGTTTATTTTACAGTTTATGAGAATTGTAAGAAGTATTTCTCTAATGGGAATCCTAATAATTCAGCCGCCCATGCTGTTTCTGGCGTTTGCGCTACCGTTGCGAGCGATGCAGTATTTACACCGATGGATATGGTTAAGCAGAGGTTGCAGCTGAGCAATAGTCCTTATAGGGGAGTTTGGGATTGTGTCAAAAGGGTTCTAAGAGATGAGGGTTTTGGAGCATTTTATGCATCCTATAGAACTACAGTGTTGATGAATGCACCGTTTACTGCTGTGCATTTTGCCACATATGAGGCTGCTAAGAGGGGTTTGATGGAGGTTTCGCCGGAGAGTGTCAATGATGAACAGTGGATTGTTCACGCCACAGCGGGGGCTGCTGCCGGAGCATCAGCAGCGTTTATTACAACGCCGTTTGATGTTGTTAAGACTCAATTACAATGTCAGGGTGTTTGTGGATGCGATAGATTCAAAAGCGGTTCAATCGGGGATGTCATCCAAACAATATTGAAGAAGGATGGATATAGAGGGCTCATGAGGGGTTGGATCCCGAGGATGCTTTTTCATGCTCCCGCTGCGGCTATCTGCTGGTCAACGTATGAAGGGTTAAAATCCTTCTTCCAAGAACTGAACGGAAGCAGTGGGGAAGTGACCTAA | 969 | 47.78 | MATEATEATTKFQNPDFRPVEIVLAAHDGLRFWEFMIAGSIAGSVEHMAMFPVDTVKTQMQALVSCPIKSVGVRQALRSILKSEGPAGLYRGIGAMGLGAGPAHAVYFTVYENCKKYFSNGNPNNSAAHAVSGVCATVASDAVFTPMDMVKQRLQLSNSPYRGVWDCVKRVLRDEGFGAFYASYRTTVLMNAPFTAVHFATYEAAKRGLMEVSPESVNDEQWIVHATAGAAAGASAAFITTPFDVVKTQLQCQGVCGCDRFKSGSIGDVIQTILKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEGLKSFFQELNGSSGEVT | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 53235588 | 53238342 | - | evm.model.ptg000010l.508 | HCH2g0996 | 540221 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH2g0996 | 322 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 124 | 208 | IPR018108 | - | |
HCH2g0996 | 322 | Gene3D | Mitochondrial carrier domain | 160 | 322 | IPR023395 | - | |
HCH2g0996 | 322 | PRINTS | Mitochondrial carrier protein signature | 35 | 48 | IPR002067 | GO:0055085(InterPro) | |
HCH2g0996 | 322 | PRINTS | Mitochondrial carrier protein signature | 48 | 62 | IPR002067 | GO:0055085(InterPro) | |
HCH2g0996 | 322 | PRINTS | Mitochondrial carrier protein signature | 229 | 251 | IPR002067 | GO:0055085(InterPro) | |
HCH2g0996 | 322 | PRINTS | Mitochondrial carrier protein signature | 139 | 157 | IPR002067 | GO:0055085(InterPro) | |
HCH2g0996 | 322 | PRINTS | Mitochondrial carrier protein signature | 181 | 199 | IPR002067 | GO:0055085(InterPro) | |
HCH2g0996 | 322 | Gene3D | Mitochondrial carrier domain | 8 | 159 | IPR023395 | - | |
HCH2g0996 | 322 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 30 | 117 | IPR018108 | - | |
HCH2g0996 | 322 | PANTHER | MITOFERRIN-1-RELATED | 24 | 313 | - | GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER) | |
HCH2g0996 | 322 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 220 | 310 | IPR018108 | - | |
HCH2g0996 | 322 | FunFam | Mitochondrial substrate carrier family protein | 16 | 212 | - | - | |
HCH2g0996 | 322 | Pfam | Mitochondrial carrier protein | 220 | 313 | IPR018108 | - | |
HCH2g0996 | 322 | Pfam | Mitochondrial carrier protein | 30 | 120 | IPR018108 | - | |
HCH2g0996 | 322 | Pfam | Mitochondrial carrier protein | 124 | 211 | IPR018108 | - | |
HCH2g0996 | 322 | SUPERFAMILY | Mitochondrial carrier | 28 | 306 | IPR023395 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0996 | HCH-Chr2:53235588 | HCH9g0795 | HCH-Chr9:5508358 | 3.90E-129 | dispersed | |
HCH2g0996 | HCH-Chr2:53235588 | HCH13g0668 | HCH-Chr13:5330930 | 8.60E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH2g0996 | K15113 | - | csv:101215924 | 579.326 |