Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g0998 ATGTCTTGTTCCATTTCCACATCTCCTTGCGCTTCCTGTAAATTGCTAAGGCGCCGCTGCACCAACAACTGCATATTCGCTCCTTATTTCCCTTCCGATGACCCCCGCAAGTTTGCTATTCTTCACAAGATCTTCGGTGCTAGCAACGTCAGCAAAATGTTACTGGAGCTTCCGGTCGATCAGAGAGCAGATGCAGTGACCAGTTTAGTATACGAAGCTAGTGCAAGACTGCGAGATCCAGTTTACGGCTGCGCCGGTGCAATATCTATCCTGCAAAATCAAGTGTCCGGATTGGAAATGCAGCTGGCGGCGGCACGGGCGGAGCTACTTACCATGCAAACGCAAATGCAAATGCAAATGCAGCAAGCCGAACTAGGGGCGGCCTCGACGGCGACGAGCTTCCCGATCCCGAGCCAACAAGATGATCAGAAATCGCTTCTTTTGTCAAATGCTGCCGATTATATATACCTGCTTGATTCCTAA 483 50.1 MSCSISTSPCASCKLLRRRCTNNCIFAPYFPSDDPRKFAILHKIFGASNVSKMLLELPVDQRADAVTSLVYEASARLRDPVYGCAGAISILQNQVSGLEMQLAAARAELLTMQTQMQMQMQQAELGAASTATSFPIPSQQDDQKSLLLSNAADYIYLLDS 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53245819 53246786 - evm.model.ptg000010l.506 HCH2g0998 540223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g0998 160 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
HCH2g0998 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 129 - -
HCH2g0998 160 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
HCH2g0998 160 Coils Coil 88 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0998 HCH-Chr2:53245819 HCH3g0911 HCH-Chr3:7895873 4.90E-40 dispersed
HCH9g1382 HCH-Chr9:45403445 HCH2g0998 HCH-Chr2:53245819 1.30E-30 transposed
HCH1g0339 HCH-Chr1:49997334 HCH2g0998 HCH-Chr2:53245819 1.60E-44 wgd
HCH2g0998 HCH-Chr2:53245819 HCH3g1473 HCH-Chr3:52775859 2.30E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33218 PF03195 LOB 5.80E-39 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g0998 - - - 0.0