Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH2g1008 ATGGCTTCCTGCCAAACAAACCTAGCTCGAGACTTAGCTTGTAGAGACAGCCGAGCAGCGGCCGAGCTAAAGCTCGTGTCCATATTCATCATCTTCTTCACGAGCGTCATCGGCGTATCTTCCCCGGTGCTCCTCACCCGTTACTTTCACGGTAAACCAGTTTACGACAAAGCCATCTTGGTAATCAAATGCTTCGCAGCCGGTGTCATCCTCTCCACTTCCCTCGTCCACGTCCTCCCCGACGCTTATCAAGCTCTTTCCGATTGCCAGGTGGCTTCCCACCACCCATGGAAGGATTTCCCTTTCGCCGGATTGGTTACTATGATCGGAACCTTGTTGGCTCTTCTTGTTGACTTGACGGCGAGCTCGCACGTGCAACATAGCCACTATAACCCGGTGGAGACGCGGGAGGCGGAAGTTGAGAGCGGCGGCGGCGGTGGGTTGTTGATGGTGGAGGAGGGGAAGATGGAGATGGGTGTGATGGGAGGGAGTTGCCGGGAGGCGGTGGAGGAGGAAGAGATGGTGAAGATGAAGCAGAAATTGGTGTCACAAGTATTGGAAATAGGGATAATATTTCATTCGGTGATTATTGGAGTAACGATGGGGATGTCTCAGAATCAGTGTACTATTAGGCCTCTTGTTGCTGCTCTTGCTTTTCATCAGATTTTTGAAGGAATGGGTCTTGGTGGTTGTATTGCTCAGGCAGGATTTAGCTTTGGGACGACAGCGTACATGTGTTTCATGTTCTCAGTAACAACACCAATGGGGATAGTTTTGGGGATGATACTCTTCTCAGCGACTGGTTATGATGATAGCAACCCCAAAGCCTTAATTATGGAAGGATTATTGGGATCATTATCTGCTGGGATTCTCATTTACATGGCCCTCGTTGATCTCATTGCCGTTGATTTCTTCCACAACAAGATGATGAACTCCAATCAATGGCTCAAAAAGGCATCTTTTGTTGCTTTAGCTCTTGGCTCTACCTCCATGTCCATTTTGGCTCTGTGGGCTTGA 1017 49.26 MASCQTNLARDLACRDSRAAAELKLVSIFIIFFTSVIGVSSPVLLTRYFHGKPVYDKAILVIKCFAAGVILSTSLVHVLPDAYQALSDCQVASHHPWKDFPFAGLVTMIGTLLALLVDLTASSHVQHSHYNPVETREAEVESGGGGGLLMVEEGKMEMGVMGGSCREAVEEEEMVKMKQKLVSQVLEIGIIFHSVIIGVTMGMSQNQCTIRPLVAALAFHQIFEGMGLGGCIAQAGFSFGTTAYMCFMFSVTTPMGIVLGMILFSATGYDDSNPKALIMEGLLGSLSAGILIYMALVDLIAVDFFHNKMMNSNQWLKKASFVALALGSTSMSILALWA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 53303618 53304935 + evm.model.ptg000010l.496 HCH2g1008 540233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH2g1008 338 Pfam ZIP Zinc transporter 22 335 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH2g1008 338 NCBIfam ZIP zinc/iron transport family 11 338 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
HCH2g1008 338 PANTHER ZINC/IRON TRANSPORTER 20 337 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1008 HCH-Chr2:53303618 HCH3g0923 HCH-Chr3:8177614 3.50E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH2g1008 K14709 - vvi:100250102 486.108